Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 1.0e-55 219.9 116 100.0
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 8.5e-23 110.5 111 61.3
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.1e-14 83.6 72 59.7
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 3.2e-14 82.0 68 61.8
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 7.2e-14 80.9 86 55.8
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 2.1e-13 79.3 73 60.3
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 2.1e-13 79.3 73 60.3
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 2.7e-13 79.0 83 54.2
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 4.7e-13 78.2 68 55.9
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 8.0e-13 77.4 84 52.4
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 8.0e-13 77.4 67 58.2
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 8.0e-13 77.4 74 56.8
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 1.0e-12 77.0 89 47.2
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 1.4e-12 76.6 80 55.0
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 1.8e-12 76.3 78 51.3
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 2.3e-12 75.9 79 54.4
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 3.0e-12 75.5 80 53.8
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 4.0e-12 75.1 80 51.2
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 4.0e-12 75.1 64 62.5
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 4.0e-12 75.1 69 56.5
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 5.2e-12 74.7 105 44.8
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 5.2e-12 74.7 103 40.8
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 5.2e-12 74.7 105 41.9
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 5.2e-12 74.7 115 44.3
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 6.8e-12 74.3 67 55.2
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 6.8e-12 74.3 67 55.2
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 8.8e-12 73.9 64 57.8
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 1.2e-11 73.6 105 41.0
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 1.2e-11 73.6 68 57.4
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 1.5e-11 73.2 105 41.9
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 1.5e-11 73.2 72 55.6
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 2.0e-11 72.8 105 41.0
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 2.0e-11 72.8 104 43.3
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 2.0e-11 72.8 64 60.9
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 2.0e-11 72.8 80 55.0
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 2.6e-11 72.4 67 55.2
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 2.6e-11 72.4 68 55.9
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 2.6e-11 72.4 75 53.3
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 2.6e-11 72.4 105 41.0
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 3.4e-11 72.0 68 55.9
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 4.4e-11 71.6 64 57.8
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 5.7e-11 71.2 64 57.8
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 5.7e-11 71.2 77 53.2
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 7.5e-11 70.9 106 45.3
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 7.5e-11 70.9 67 56.7
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 7.5e-11 70.9 80 50.0
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 7.5e-11 70.9 123 42.3
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 9.8e-11 70.5 68 52.9
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 1.3e-10 70.1 64 57.8
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.7e-10 69.7 108 47.2
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.7e-10 69.7 64 59.4
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.7e-10 69.7 64 59.4
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 1.7e-10 69.7 65 55.4
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 2.2e-10 69.3 68 51.5
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 2.2e-10 69.3 64 57.8
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 2.2e-10 69.3 79 53.2
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 2.8e-10 68.9 64 54.7
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 3.7e-10 68.6 68 51.5
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 3.7e-10 68.6 113 42.5
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 3.7e-10 68.6 83 49.4
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 3.7e-10 68.6 72 52.8
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 4.8e-10 68.2 95 45.3
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 4.8e-10 68.2 73 53.4
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 4.8e-10 68.2 82 50.0
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 4.8e-10 68.2 66 56.1
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 4.8e-10 68.2 64 57.8
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 4.8e-10 68.2 66 51.5
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 6.3e-10 67.8 66 53.0
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 6.3e-10 67.8 72 50.0
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 6.3e-10 67.8 74 54.1
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 8.3e-10 67.4 77 50.6
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 8.3e-10 67.4 64 56.2
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 8.3e-10 67.4 122 39.3
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 8.3e-10 67.4 67 52.2
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 1.1e-09 67.0 69 52.2
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 1.1e-09 67.0 68 55.9
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 1.8e-09 66.2 116 43.1
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 1.8e-09 66.2 116 42.2
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 2.4e-09 65.9 66 54.5
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 4.1e-09 65.1 68 52.9
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 7.0e-09 64.3 116 41.4
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 7.0e-09 64.3 64 53.1
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 9.1e-09 63.9 113 39.8
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.2e-08 63.5 64 53.1
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 1.2e-08 63.5 92 44.6
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 1.6e-08 63.2 66 48.5
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 1.6e-08 63.2 68 47.1
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 2.0e-08 62.8 73 50.7
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 2.7e-08 62.4 113 39.8
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 3.5e-08 62.0 67 46.3
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 4.5e-08 61.6 116 41.4
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 1.0e-07 60.5 92 44.6
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 1.0e-07 60.5 129 39.5
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.3e-07 60.1 91 40.7
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.3e-07 60.1 91 40.7
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.7e-07 59.7 64 50.0
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 2.9e-07 58.9 112 36.6
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 2.9e-07 58.9 62 56.5
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 8.6e-07 57.4 68 45.6
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 8.6e-07 57.4 68 45.6
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 7.2e-06 54.3 44 61.4


User provided reference genes

Program Settings