Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0306200 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 1.2e-39 166.0 83 100.0
Zm00001eb130280 Zea mays HOM05D000786 ORTHO05D000779 1.0e-14 83.2 71 66.2
Zm00001eb014190 Zea mays HOM05D000786 ORTHO05D000779 2.2e-12 75.5 79 53.2
Os05g0356800 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 2.8e-12 75.1 44 79.5
Zm00001eb285950 Zea mays HOM05D000786 ORTHO05D000779 6.3e-12 73.9 44 79.5
Os03g0302500 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 9.1e-11 70.1 49 69.4
Zm00001eb396430 Zea mays HOM05D000786 ORTHO05D000779 2.0e-10 68.9 52 63.5
Nn3g21623 Nelumbo nucifera HOM05D000786 ORTHO05D000779 2.7e-10 68.6 66 54.5
Cfa005844 Carpinus fangiana HOM05D000786 ORTHO05D000779 7.7e-10 67.0 44 68.2
HPP92_025190 Vanilla planifolia HOM05D000786 ORTHO05D000779 7.7e-10 67.0 74 54.1
Os07g0690200 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 1.3e-09 66.2 42 76.2
Zm00001eb111850 Zea mays HOM05D000786 ORTHO05D000779 1.3e-09 66.2 51 72.5
AT2G47480 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 1.7e-09 65.9 74 48.6
PGR119G0416 Punica granatum HOM05D000786 ORTHO05D000779 2.2e-09 65.5 76 50.0
Peaxi162Scf00001g00286 Petunia axillaris HOM05D000786 ORTHO05D000779 2.9e-09 65.1 42 69.0
Glyma.19G214700 Glycine max HOM05D000786 ORTHO05D000779 3.8e-09 64.7 42 64.3
Lj5g0012143 Lotus japonicus HOM05D000786 ORTHO05D000779 3.8e-09 64.7 42 69.0
Psat6g163480 Pisum sativum HOM05D000786 ORTHO05D000779 3.8e-09 64.7 42 71.4
CSS0019360 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 5.0e-09 64.3 68 51.5
arahy.Tifrunner.gnm1.ann1.C0YEFK Arachis hypogaea HOM05D000786 ORTHO05D000779 6.5e-09 63.9 42 64.3
MSTRG.21668 Avicennia marina HOM05D000786 ORTHO05D000779 6.5e-09 63.9 42 66.7
Glyma.02G014500 Glycine max HOM05D000786 ORTHO05D000779 6.5e-09 63.9 42 71.4
Solyc08g062810.1 Solanum lycopersicum HOM05D000786 ORTHO05D000779 6.5e-09 63.9 67 50.7
Atru.chr5.1054 Acer truncatum HOM05D000786 ORTHO05D000779 8.5e-09 63.5 42 66.7
Glyma.03G218000 Glycine max HOM05D000786 ORTHO05D000779 8.5e-09 63.5 42 61.9
CAN.G668.24 Capsicum annuum HOM05D000786 ORTHO05D000779 1.1e-08 63.2 42 64.3
Cc08_g11850 Coffea canephora HOM05D000786 ORTHO05D000779 1.1e-08 63.2 42 64.3
COL.COLO4_23268 Corchorus olitorius HOM05D000786 ORTHO05D000779 1.1e-08 63.2 67 52.2
Nn4g25661 Nelumbo nucifera HOM05D000786 ORTHO05D000779 1.1e-08 63.2 42 73.8
Solyc09g075650.3 Solanum lycopersicum HOM05D000786 ORTHO05D000779 1.1e-08 63.2 42 64.3
Sopen09g030450 Solanum pennellii HOM05D000786 ORTHO05D000779 1.1e-08 63.2 42 64.3
PGSC0003DMG400031801 Solanum tuberosum HOM05D000786 ORTHO05D000779 1.1e-08 63.2 42 64.3
CANSAT25G1363 Cannabis sativa HOM05D000786 ORTHO05D000779 1.5e-08 62.8 67 50.7
Ca_10303_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 1.5e-08 62.8 42 69.0
ClCG10G005480 Citrullus lanatus HOM05D000786 ORTHO05D000779 1.5e-08 62.8 38 76.3
SGA_v2.0_scaffold376G50264 Striga asiatica HOM05D000786 ORTHO05D000779 1.5e-08 62.8 74 48.6
vmacro02416 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 1.5e-08 62.8 67 50.7
Haze_05005 Corylus avellana HOM05D000786 ORTHO05D000779 1.9e-08 62.4 44 63.6
Rhsim13G0006500 Rhododendron simsii HOM05D000786 ORTHO05D000779 1.9e-08 62.4 71 53.5
THA.LOC104817471 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 1.9e-08 62.4 40 70.0
CiPaw.07G114700 Carya illinoinensis HOM05D000786 ORTHO05D000779 2.5e-08 62.0 70 50.0
Glyma.10G015200 Glycine max HOM05D000786 ORTHO05D000779 2.5e-08 62.0 42 69.0
TAR362G0003 Trochodendron aralioides HOM05D000786 ORTHO05D000779 2.5e-08 62.0 72 51.4
TAR636G3362 Trochodendron aralioides HOM05D000786 ORTHO05D000779 2.5e-08 62.0 42 66.7
vmacro03014 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 2.5e-08 62.0 42 64.3
GSVIVG01035043001 Vitis vinifera HOM05D000786 ORTHO05D000779 2.5e-08 62.0 42 66.7
Phvul.001G211500 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 3.2e-08 61.6 42 61.9
ClCG10G011210 Citrullus lanatus HOM05D000786 ORTHO05D000779 4.2e-08 61.2 52 55.8
Ciclev10022952m.g Citrus clementina HOM05D000786 ORTHO05D000779 4.2e-08 61.2 42 66.7
CsaV3_4G001090 Cucumis sativus L. HOM05D000786 ORTHO05D000779 4.2e-08 61.2 54 55.6
HanXRQChr01g0000881 Helianthus annuus HOM05D000786 ORTHO05D000779 4.2e-08 61.2 42 64.3
Nitab4.5_0000116g0100 Nicotiana tabacum HOM05D000786 ORTHO05D000779 4.2e-08 61.2 42 61.9
Nitab4.5_0004002g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 4.2e-08 61.2 42 61.9
QL12p028929 Quercus lobata HOM05D000786 ORTHO05D000779 4.2e-08 61.2 72 51.4
TPR.G19780 Trifolium pratense HOM05D000786 ORTHO05D000779 4.2e-08 61.2 51 56.9
ATR0706G273 Amborella trichopoda HOM05D000786 ORTHO05D000779 5.5e-08 60.8 43 65.1
Medtr1g087730 Medicago truncatula HOM05D000786 ORTHO05D000779 5.5e-08 60.8 42 66.7
Medtr7g109290 Medicago truncatula HOM05D000786 ORTHO05D000779 5.5e-08 60.8 42 59.5
Carub.0005s2930 Capsella rubella HOM05D000786 ORTHO05D000779 7.2e-08 60.5 78 44.9
CSS0023598 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 9.4e-08 60.1 71 47.9
Ciclev10003628m.g Citrus clementina HOM05D000786 ORTHO05D000779 9.4e-08 60.1 42 61.9
Haze_04084 Corylus avellana HOM05D000786 ORTHO05D000779 9.4e-08 60.1 67 44.8
MELO3C017928.2 Cucumis melo HOM05D000786 ORTHO05D000779 9.4e-08 60.1 54 53.7
Eucgr.H01070 Eucalyptus grandis HOM05D000786 ORTHO05D000779 9.4e-08 60.1 42 64.3
Thhalv10001686m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 9.4e-08 60.1 66 48.5
MBI18_g24950_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 9.4e-08 60.1 50 56.0
Nitab4.5_0011367g0010 Nicotiana tabacum HOM05D000786 ORTHO05D000779 1.2e-07 59.7 73 45.2
Potri.014G123600 Populus trichocarpa HOM05D000786 ORTHO05D000779 1.2e-07 59.7 44 65.9
TAR365G1099 Trochodendron aralioides HOM05D000786 ORTHO05D000779 1.2e-07 59.7 75 48.0
Atru.chr2.141 Acer truncatum HOM05D000786 ORTHO05D000779 1.6e-07 59.3 42 61.9
Thecc.01G309800 Theobroma cacao HOM05D000786 ORTHO05D000779 1.6e-07 59.3 42 64.3
Cfa006682 Carpinus fangiana HOM05D000786 ORTHO05D000779 2.1e-07 58.9 56 50.0
Migut.N02109 Erythranthe guttata HOM05D000786 ORTHO05D000779 2.1e-07 58.9 40 67.5
Lsat_1_v5_gn_9_25421 Lactuca sativa HOM05D000786 ORTHO05D000779 2.1e-07 58.9 60 50.0
Manes.01G225400 Manihot esculenta HOM05D000786 ORTHO05D000779 2.1e-07 58.9 75 46.7
Oeu036316.1 Olea europaea HOM05D000786 ORTHO05D000779 2.1e-07 58.9 71 43.7
PGR083G1617 Punica granatum HOM05D000786 ORTHO05D000779 2.1e-07 58.9 72 45.8
Sp5g00870 Schrenkiella parvula HOM05D000786 ORTHO05D000779 2.1e-07 58.9 78 38.5
Zm00001eb063640 Zea mays HOM05D000786 ORTHO05D000779 2.1e-07 58.9 40 67.5
Actinidia15584 Actinidia chinensis HOM05D001250 ORTHO05D000627 2.7e-07 58.5 40 72.5
Cpa.g.sc18.2 Carica papaya HOM05D000786 ORTHO05D000779 2.7e-07 58.5 72 48.6
Duzib133G0956 Durio zibethinus HOM05D000786 ORTHO05D000779 2.7e-07 58.5 70 48.6
FAN09G3870 Fragaria x ananassa HOM05D013158 ORTHO05D000779 2.7e-07 58.5 42 64.3
FAN14G2240 Fragaria x ananassa HOM05D013158 ORTHO05D000779 2.7e-07 58.5 42 64.3
Manes.05G001600 Manihot esculenta HOM05D000786 ORTHO05D000779 2.7e-07 58.5 76 46.1
Psat5g095920 Pisum sativum HOM05D000786 ORTHO05D000779 2.7e-07 58.5 42 57.1
Aqoxy2G02520 Aquilegia oxysepala HOM05D000786 ORTHO05D000779 3.6e-07 58.2 40 65.0
MSTRG.20397 Avicennia marina HOM05D000786 ORTHO05D000779 3.6e-07 58.2 42 57.1
CANSAT56G0558 Cannabis sativa HOM05D000786 ORTHO05D000779 3.6e-07 58.2 62 45.2
Gohir.D12G130300 Gossypium hirsutum HOM05D000786 ORTHO05D000779 3.6e-07 58.2 75 45.3
Gorai.008G141600 Gossypium raimondii HOM05D000786 ORTHO05D000779 3.6e-07 58.2 75 45.3
Lalb_Chr21g0309451 Lupinus albus HOM05D000786 ORTHO05D000779 3.6e-07 58.2 41 65.9
Nitab4.5_0001790g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 3.6e-07 58.2 67 49.3
THA.LOC104818741 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 3.6e-07 58.2 50 54.0
BcaC07g40738 Brassica carinata HOM05D000786 ORTHO05D000779 4.7e-07 57.8 75 41.3
BolC8t51317H Brassica oleracea HOM05D000786 ORTHO05D000779 4.7e-07 57.8 75 41.3
Dinv02076 Davidia involucrata HOM05D000786 ORTHO05D000779 4.7e-07 57.8 44 68.2
TWI18G0458 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 4.7e-07 57.8 72 43.1
AL4G47040 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 6.1e-07 57.4 41 61.0
MELO3C025388.2 Cucumis melo HOM05D000786 ORTHO05D000779 6.1e-07 57.4 38 68.4
CsaV3_1G040610 Cucumis sativus L. HOM05D000786 ORTHO05D000779 6.1e-07 57.4 42 59.5
MD04G1195600 Malus domestica HOM05D000786 ORTHO05D000779 6.1e-07 57.4 42 66.7
ClCG03G015430 Citrullus lanatus HOM05D000786 ORTHO05D000779 8.0e-07 57.0 60 46.7
MELO3C015491.2 Cucumis melo HOM05D000786 ORTHO05D000779 8.0e-07 57.0 42 59.5
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 8.0e-07 57.0 79 44.3
Migut.B00992 Erythranthe guttata HOM05D000786 ORTHO05D000779 8.0e-07 57.0 42 57.1
Lalb_Chr12g0199881 Lupinus albus HOM05D000786 ORTHO05D000779 8.0e-07 57.0 55 47.3
Oeu013988.1 Olea europaea HOM05D000786 ORTHO05D000779 8.0e-07 57.0 70 42.9
Os03g0831400 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 8.0e-07 57.0 34 79.4
Sed0012854 Sechium edule HOM05D000786 ORTHO05D000779 8.0e-07 57.0 84 41.7
Sopen08g018330 Solanum pennellii HOM05D000786 ORTHO05D000779 8.0e-07 57.0 67 47.8
TWI12G0435 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 8.0e-07 57.0 40 62.5
ATR1125G005 Amborella trichopoda HOM05D000786 ORTHO05D000779 1.0e-06 56.6 40 67.5
A09p54500 Brassica napus HOM05D000786 ORTHO05D000779 1.0e-06 56.6 75 41.3
C08p37390 Brassica napus HOM05D000786 ORTHO05D000779 1.0e-06 56.6 75 41.3
BraA09t40863Z Brassica rapa HOM05D000786 ORTHO05D000779 1.0e-06 56.6 75 41.3
Thhalv10006328m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 1.0e-06 56.6 73 41.1
Sabra06G0116700 Salix brachista HOM05D000786 ORTHO05D000779 1.0e-06 56.6 55 49.1
BcaC07g40777 Brassica carinata HOM05D000786 ORTHO05D000779 1.4e-06 56.2 74 41.9
Potri.006G147700 Populus trichocarpa HOM05D000786 ORTHO05D000779 1.4e-06 56.2 55 49.1
Prupe.6G315400 Prunus persica HOM05D000786 ORTHO05D000779 1.4e-06 56.2 42 64.3
RcHm_v2.0_Chr3g0456821 Rosa chinensis HOM05D013158 ORTHO05D000779 1.4e-06 56.2 42 61.9
HPP92_010670 Vanilla planifolia HOM05D000786 ORTHO05D000779 1.4e-06 56.2 41 65.9
BolC4t21685H Brassica oleracea HOM05D000786 ORTHO05D000779 1.8e-06 55.8 71 45.1
Cpa.g.sc25.79 Carica papaya HOM05D000786 ORTHO05D000779 1.8e-06 55.8 60 46.7
CiPaw.08G156800 Carya illinoinensis HOM05D000786 ORTHO05D000779 1.8e-06 55.8 50 54.0
DCAR_002871 Daucus carota HOM05D000786 ORTHO05D000779 1.8e-06 55.8 40 57.5
Gohir.A12G126900 Gossypium hirsutum HOM05D000786 ORTHO05D000779 1.8e-06 55.8 75 44.0
Nitab4.5_0001519g0070 Nicotiana tabacum HOM05D000786 ORTHO05D000779 1.8e-06 55.8 55 43.6
A05p00450 Brassica napus HOM05D000786 ORTHO05D000779 2.3e-06 55.5 71 45.1
BraA05t19043Z Brassica rapa HOM05D000786 ORTHO05D000779 2.3e-06 55.5 71 45.1
CSS0019123 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 2.3e-06 55.5 63 46.0
Cpa.g.sc48.139 Carica papaya HOM05D000786 ORTHO05D000779 2.3e-06 55.5 54 50.0
ClCG06G004770 Citrullus lanatus HOM05D000786 ORTHO05D000779 2.3e-06 55.5 49 57.1
CsaV3_3G005210 Cucumis sativus L. HOM05D000786 ORTHO05D000779 2.3e-06 55.5 38 65.8
CsaV3_6G022560 Cucumis sativus L. HOM05D000786 ORTHO05D000779 2.3e-06 55.5 55 49.1
Dinv44318 Davidia involucrata HOM05D000786 ORTHO05D000779 2.3e-06 55.5 72 47.2
Sc13g0006300 Simmondsia chinensis HOM05D000786 ORTHO05D000779 2.3e-06 55.5 42 57.1
Sc18g0002250 Simmondsia chinensis HOM05D000786 ORTHO05D000779 2.3e-06 55.5 74 41.9
SHI00507 Sapria himalayana HOM05D000786 ORTHO05D000779 3.0e-06 55.1 42 54.8
Sed0011211 Sechium edule HOM05D000786 ORTHO05D000779 3.0e-06 55.1 40 60.0
Ah.09g228080 Amaranthus hybridus HOM05D000786 ORTHO05D000779 4.0e-06 54.7 41 56.1
CARHR142870 Cardamine hirsuta HOM05D000786 ORTHO05D000779 4.0e-06 54.7 40 60.0
CARHR172910 Cardamine hirsuta HOM05D000786 ORTHO05D000779 4.0e-06 54.7 72 41.7
ClCG03G017660 Citrullus lanatus HOM05D032089 ORTHO05D000779 4.0e-06 54.7 42 57.1
ClCG06G009930 Citrullus lanatus HOM05D000786 ORTHO05D000779 4.0e-06 54.7 40 60.0
CsaV3_4G035780 Cucumis sativus L. HOM05D000786 ORTHO05D000779 4.0e-06 54.7 55 45.5
Eucgr.F03151 Eucalyptus grandis HOM05D000786 ORTHO05D000779 4.0e-06 54.7 75 38.7
MD12G1207900 Malus domestica HOM05D000786 ORTHO05D000779 4.0e-06 54.7 80 46.2
Manes.03G201501 Manihot esculenta HOM05D000786 ORTHO05D000779 4.0e-06 54.7 42 61.9
Manes.09G175200 Manihot esculenta HOM05D000786 ORTHO05D000779 4.0e-06 54.7 40 60.0
Aa31LG10G16450 Aethionema arabicum HOM05D000786 ORTHO05D000779 5.2e-06 54.3 76 40.8
BcaB02g08768 Brassica carinata HOM05D000786 ORTHO05D000779 5.2e-06 54.3 76 44.7
CiPaw.07G027400 Carya illinoinensis HOM05D000786 ORTHO05D000779 5.2e-06 54.3 44 54.5
Cc06_g11610 Coffea canephora HOM05D000786 ORTHO05D000779 5.2e-06 54.3 55 45.5
Peaxi162Scf00297g00033 Petunia axillaris HOM05D000786 ORTHO05D000779 5.2e-06 54.3 55 49.1
Potri.003G043600 Populus trichocarpa HOM05D000786 ORTHO05D000779 5.2e-06 54.3 42 57.1
Rhsim04G0232400 Rhododendron simsii HOM05D000786 ORTHO05D000779 5.2e-06 54.3 40 62.5
vmacro06302 Vaccinium macrocarpon HOM05D000786 ORTHO05D000779 5.2e-06 54.3 62 46.8
Gohir.A05G040800 Gossypium hirsutum HOM05D000786 ORTHO05D000779 6.8e-06 53.9 42 59.5
Gohir.A06G086000 Gossypium hirsutum HOM05D000786 ORTHO05D000779 6.8e-06 53.9 60 46.7
Gohir.D06G085300 Gossypium hirsutum HOM05D000786 ORTHO05D000779 6.8e-06 53.9 60 46.7
Gorai.009G043500 Gossypium raimondii HOM05D000786 ORTHO05D000779 6.8e-06 53.9 42 59.5
Gorai.010G098600 Gossypium raimondii HOM05D000786 ORTHO05D000779 6.8e-06 53.9 60 46.7
Solyc07g040730.1 Solanum lycopersicum HOM05D000786 ORTHO05D000779 6.8e-06 53.9 55 41.8
Sopen07g019470 Solanum pennellii HOM05D000786 ORTHO05D000779 6.8e-06 53.9 55 41.8
PGSC0003DMG400008197 Solanum tuberosum HOM05D000786 ORTHO05D000779 6.8e-06 53.9 81 40.7
PGSC0003DMG400032797 Solanum tuberosum HOM05D000786 ORTHO05D000779 6.8e-06 53.9 55 41.8
Ah.11g049440 Amaranthus hybridus HOM05D000786 ORTHO05D000779 8.8e-06 53.5 43 58.1
CAN.G57.13 Capsicum annuum HOM05D000786 ORTHO05D000779 8.8e-06 53.5 52 46.2
Cfa003058 Carpinus fangiana HOM05D000786 ORTHO05D000779 8.8e-06 53.5 40 60.0
Cfa003555 Carpinus fangiana HOM05D000786 ORTHO05D000779 8.8e-06 53.5 51 49.0
COL.COLO4_21085 Corchorus olitorius HOM05D000786 ORTHO05D000779 8.8e-06 53.5 47 55.3
MELO3C008511.2 Cucumis melo HOM05D000786 ORTHO05D000779 8.8e-06 53.5 75 42.7
Potri.010G140800 Populus trichocarpa HOM05D000786 ORTHO05D000779 8.8e-06 53.5 42 64.3
QL02p000730 Quercus lobata HOM05D000786 ORTHO05D000779 8.8e-06 53.5 42 57.1
Sabra01G0143900 Salix brachista HOM05D000786 ORTHO05D000779 8.8e-06 53.5 42 54.8


User provided reference genes

Program Settings