Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0304400 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D010109 3.8e-85 318.2 165 100.0
Zm00001eb340260 Zea mays HOM05D001935 ORTHO05D010109 5.8e-33 144.8 165 56.4
SalBow3G1122 Salvia bowleyana HOM05D001935 ORTHO05D010109 4.0e-10 68.9 167 35.9
CiPaw.07G116400 Carya illinoinensis HOM05D001935 ORTHO05D010109 6.9e-10 68.2 131 31.3
QL12p020164 Quercus lobata HOM05D001935 ORTHO05D010109 6.9e-10 68.2 130 33.1
TAR633G2657 Trochodendron aralioides HOM05D001935 ORTHO05D010109 9.0e-10 67.8 129 34.9
MELO3C015930.2 Cucumis melo HOM05D001935 ORTHO05D010109 2.6e-09 66.2 128 34.4
unitig_0.g277 Utricularia gibba HOM05D001935 ORTHO05D010109 3.4e-09 65.9 132 36.4
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 4.5e-09 65.5 91 42.9
Cpa.g.sc18.27 Carica papaya HOM05D001935 ORTHO05D010109 1.7e-08 63.5 131 32.8
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 1.7e-08 63.5 88 42.0
Zm00001eb156470 Zea mays HOM05D001935 ORTHO05D001700 2.9e-08 62.8 111 39.6
Zm00001eb440490 Zea mays HOM05D001935 ORTHO05D001700 2.9e-08 62.8 111 39.6
Haze_05029 Corylus avellana HOM05D001935 ORTHO05D010109 3.8e-08 62.4 132 32.6
ATR0706G209 Amborella trichopoda HOM05D001935 ORTHO05D010109 4.9e-08 62.0 136 31.6
Lj1g0023097 Lotus japonicus HOM05D001935 ORTHO05D010109 4.9e-08 62.0 127 33.1
Aqoxy2G01830 Aquilegia oxysepala HOM05D001935 ORTHO05D010109 6.5e-08 61.6 141 32.6
Actinidia21004 Actinidia chinensis HOM05D001136 ORTHO05D001144 8.4e-08 61.2 147 31.3
CSS0036092 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 8.4e-08 61.2 132 34.8
Sabra06G0082000 Salix brachista HOM05D001935 ORTHO05D010109 8.4e-08 61.2 126 33.3
Atru.chr5.1024 Acer truncatum HOM05D001935 ORTHO05D010109 1.1e-07 60.8 136 30.9
Potri.006G105500 Populus trichocarpa HOM05D001935 ORTHO05D010109 1.1e-07 60.8 131 33.6
Potri.006G105600 Populus trichocarpa HOM05D001935 ORTHO05D010109 1.1e-07 60.8 131 33.6
Atru.chr5.1021 Acer truncatum HOM05D001935 ORTHO05D010109 1.9e-07 60.1 140 31.4
CSS0010042 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 2.5e-07 59.7 162 30.9
CSS0012652 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 2.5e-07 59.7 162 30.9
Cfa005813 Carpinus fangiana HOM05D001935 ORTHO05D010109 2.5e-07 59.7 133 30.8
Sabra16G0129700 Salix brachista HOM05D001935 ORTHO05D010109 2.5e-07 59.7 169 27.8
TPR.G4060 Trifolium pratense HOM05D001935 ORTHO05D010109 3.2e-07 59.3 129 34.1
COL.COLO4_23245 Corchorus olitorius HOM05D001935 ORTHO05D010109 4.2e-07 58.9 135 31.9
Manes.01G226900 Manihot esculenta HOM05D001935 ORTHO05D010109 4.2e-07 58.9 128 31.2
Psat3g020520 Pisum sativum HOM05D001935 ORTHO05D010109 4.2e-07 58.9 127 35.4
Potri.016G128800 Populus trichocarpa HOM05D001935 ORTHO05D010109 4.2e-07 58.9 134 32.8
PGR044G2318 Punica granatum HOM05D001935 ORTHO05D010109 4.2e-07 58.9 168 32.1
Gorai.008G140400 Gossypium raimondii HOM05D001935 ORTHO05D010109 5.5e-07 58.5 126 34.9
Hma1.2p1_0486F.1_g163095 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 5.5e-07 58.5 131 32.1
Hma1.2p1_0486F.1_g163120 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 5.5e-07 58.5 131 32.1
Oeu038015.2 Olea europaea HOM05D001935 ORTHO05D010109 7.1e-07 58.2 134 31.3
Rhsim13G0005300 Rhododendron simsii HOM05D001935 ORTHO05D010109 7.1e-07 58.2 134 36.6
Sed0011579 Sechium edule HOM05D001935 ORTHO05D010109 7.1e-07 58.2 128 30.5
Zm00001eb439660 Zea mays HOM05D001935 ORTHO05D001700 7.1e-07 58.2 100 44.0
Dinv10085 Davidia involucrata HOM05D001935 ORTHO05D010109 9.3e-07 57.8 87 42.5
Duzib138G0891 Durio zibethinus HOM05D001935 ORTHO05D010109 9.3e-07 57.8 172 29.7
SGA_v2.0_scaffold376G50276 Striga asiatica HOM05D001935 ORTHO05D010109 9.3e-07 57.8 126 35.7
Thecc.01G311900 Theobroma cacao HOM05D001935 ORTHO05D010109 1.2e-06 57.4 172 31.4
Ca_09205_v3 Cicer arietinum L. HOM05D001935 ORTHO05D010109 2.1e-06 56.6 127 31.5
Gohir.A12G125800 Gossypium hirsutum HOM05D001935 ORTHO05D010109 2.1e-06 56.6 128 35.9
Gohir.D12G129300 Gossypium hirsutum HOM05D001935 ORTHO05D010109 3.5e-06 55.8 128 34.4
TAR362G0690 Trochodendron aralioides HOM05D001136 ORTHO05D010109 3.5e-06 55.8 130 33.8
CiPaw.08G090700 Carya illinoinensis HOM05D001935 ORTHO05D010109 4.6e-06 55.5 126 34.1
Rhsim13G0005200 Rhododendron simsii HOM05D001935 ORTHO05D010109 4.6e-06 55.5 126 34.9
SalBow1G4808 Salvia bowleyana HOM05D007478 ORTHO05D001700 7.9e-06 54.7 149 30.2


User provided reference genes

Program Settings