Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1912.5 968 100.0
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1425.2 915 80.1
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1339.7 1002 68.6
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1336.2 998 68.6
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1271.1 1010 65.0
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1258.8 995 65.1
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1257.3 1011 64.9
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1252.3 1049 62.2
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1239.9 1011 63.3
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1236.5 1002 62.7
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1235.3 1005 62.7
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1234.9 993 64.6
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1232.6 1004 64.0
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1232.6 997 64.0
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1231.9 999 63.1
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1229.2 1001 62.8
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1225.7 1000 62.5
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1224.5 1004 62.9
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1224.2 1020 61.6
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1223.8 1005 62.5
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1223.4 997 63.0
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1222.6 1023 62.4
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1222.6 1004 62.7
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1222.2 1005 62.5
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1221.1 1014 62.4
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1219.5 1031 61.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1218.8 1024 61.8
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1215.3 1005 62.7
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1214.5 994 63.4
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1213.7 1002 60.8
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1213.4 1004 61.8
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1213.4 1011 61.5
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1211.1 1029 61.3
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1211.1 977 63.8
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1209.5 1000 62.1
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1208.7 1019 62.1
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1208.0 989 63.1
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1206.8 990 62.4
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1206.0 1003 62.0
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1205.7 999 62.3
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1205.7 989 63.3
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1205.3 1011 61.7
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1204.9 1022 61.4
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1204.1 1029 60.8
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1203.3 987 62.8
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1203.0 1010 61.4
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1203.0 1002 61.8
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1203.0 1014 61.8
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1202.6 1040 60.6
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1202.2 999 62.1
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1202.2 993 62.8
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1200.7 994 61.6
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1200.3 1011 61.6
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1199.5 1006 60.7
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1199.1 989 61.9
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1199.1 1011 61.5
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1197.6 1000 61.7
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1197.2 988 61.2
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1193.3 998 61.0
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1192.9 999 61.6
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1192.6 1000 60.6
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1192.2 996 61.2
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1189.9 1006 61.0
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1189.1 1018 60.0
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1186.8 1005 60.5
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1184.5 996 60.6
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1182.9 1004 60.6
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1182.2 1000 61.0
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1181.4 1000 61.0
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1179.1 1011 60.6
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1179.1 1011 60.4
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1178.3 1004 60.6
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1177.9 1004 60.4
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1176.8 1028 60.5
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1174.8 1004 60.4
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1168.7 1006 59.9
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1164.8 968 61.8
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1164.1 975 62.3
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1159.4 971 61.9
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1156.4 962 61.7
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1154.8 1002 59.6
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1152.9 976 60.5
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1150.2 1072 56.8
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1148.3 1005 59.0
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1146.3 975 60.7
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1144.0 975 60.4
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1144.0 966 60.9
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1134.0 976 60.1
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1131.7 1012 58.3
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1129.0 990 60.3
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1125.5 1010 58.1
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1124.8 975 60.3
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1124.8 985 60.3
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1122.1 930 63.3
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1116.7 1011 58.2
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1109.0 974 58.8
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1104.7 971 59.8
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1101.7 1103 54.6
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1100.1 976 58.3
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1092.8 1013 56.9
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1086.2 858 66.7
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1078.5 987 56.9
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1075.8 952 60.3
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 7.9e-311 1070.5 1027 56.1
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 9.9e-311 1070.1 897 61.4
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 9.4e-309 1063.5 1027 54.5
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 1.2e-308 1063.1 1014 56.8
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.8e-307 1059.3 1031 55.7
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 1.4e-304 1049.7 1039 54.4
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 1.1e-301 1040.0 1136 50.3
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 2.6e-298 1028.9 997 55.4
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 4.1e-296 1021.5 1166 49.0
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 5.4e-296 1021.1 924 59.6
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 5.4e-296 1021.1 986 56.2
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 1.8e-291 1006.1 1005 54.1
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 1.1e-280 970.3 1010 52.3
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 4.1e-280 968.4 861 60.5
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 4.1e-280 968.4 890 58.0
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 2.7e-271 939.1 959 54.3
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 7.3e-269 931.0 911 54.8
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.0e-262 910.6 858 58.6
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.3e-254 883.6 1020 48.4
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.4e-251 873.6 1032 46.5
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.7e-241 840.1 956 48.5
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 2.7e-239 832.8 806 56.3
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.4e-227 793.1 980 46.4
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.9e-222 775.8 989 45.4
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 9.4e-216 754.6 778 53.0
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.5e-208 729.9 832 46.4
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 2.8e-204 716.5 1219 37.7
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 4.0e-190 669.5 627 57.1
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 1.3e-185 654.4 688 52.6
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 2.9e-180 636.7 634 54.7
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 5.2e-174 615.9 606 55.3
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.7e-162 577.0 385 72.7
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.7e-161 574.3 336 79.8
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.3e-143 515.0 419 63.5
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.5e-136 490.7 554 48.6
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 7.1e-131 472.6 416 60.3
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 4.8e-127 459.9 463 54.9
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 3.5e-122 443.7 529 48.0
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 9.1e-94 349.4 200 75.0
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.7e-90 337.8 259 64.9
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 1.8e-86 325.1 253 68.4
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.8e-86 325.1 808 30.8
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 3.1e-86 324.3 241 71.4
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 3.5e-77 294.3 238 62.2
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.8e-70 271.9 156 75.6
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.5e-67 262.3 149 76.5
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-62 245.7 224 60.7
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 5.6e-51 207.2 993 24.5
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 3.6e-42 177.9 109 68.8
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.0e-40 172.2 90 82.2
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 3.2e-38 164.9 170 55.9
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.5e-35 156.0 149 63.8
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.2e-34 152.9 277 38.6
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 3.6e-34 151.4 218 37.2
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 5.2e-33 147.5 150 52.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 6.0e-29 134.0 205 41.5
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 2.5e-27 128.6 128 54.7
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 2.5e-27 128.6 72 73.6
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.3e-27 127.1 72 69.4
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 3.4e-24 118.2 96 60.4
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 1.4e-17 96.3 119 47.1
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 9.0e-17 93.6 90 56.7
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 4.9e-15 87.8 82 58.5
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.3e-12 79.7 84 50.0
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 6.7e-12 77.4 81 50.6
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 6.7e-12 77.4 81 50.6
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.9e-11 75.9 48 75.0
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 4.3e-11 74.7 57 64.9
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-10 72.8 36 88.9
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 2.6e-08 65.5 65 49.2


User provided reference genes

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