Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 3.7e-41 171.0 81 100.0
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 5.9e-23 110.5 84 67.9
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.2e-20 102.8 85 65.9
Zm00001eb354550 Zea mays HOM05D004817 ORTHO05D005790 1.6e-12 75.9 91 48.4
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 3.6e-12 74.7 78 52.6
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 2.3e-11 72.0 75 53.3
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 3.1e-11 71.6 72 50.0
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 6.8e-11 70.5 80 51.2
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 6.8e-11 70.5 78 51.3
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.5e-10 69.3 75 52.0
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 3.4e-10 68.2 80 46.2
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 3.4e-10 68.2 73 49.3
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 3.4e-10 68.2 75 50.7
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.4e-10 67.8 73 52.1
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 4.4e-10 67.8 73 52.1
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 7.5e-10 67.0 77 50.6
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 7.5e-10 67.0 74 50.0
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 7.5e-10 67.0 78 50.0
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 9.9e-10 66.6 73 49.3
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 9.9e-10 66.6 73 52.1
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 9.9e-10 66.6 72 50.0
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 9.9e-10 66.6 71 53.5
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.3e-09 66.2 73 52.1
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.3e-09 66.2 73 49.3
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.3e-09 66.2 80 45.0
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.7e-09 65.9 75 49.3
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 2.2e-09 65.5 74 48.6
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.9e-09 65.1 75 48.0
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 2.9e-09 65.1 73 46.6
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 3.7e-09 64.7 76 47.4
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 6.4e-09 63.9 78 46.2
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 6.4e-09 63.9 72 52.8
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.1e-08 63.2 75 48.0
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.1e-08 63.2 73 47.9
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.4e-08 62.8 73 47.9
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.4e-08 62.8 76 43.4
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.4e-08 62.8 78 46.2
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 1.9e-08 62.4 73 46.6
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 1.9e-08 62.4 74 48.6
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 1.9e-08 62.4 75 50.7
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 2.4e-08 62.0 72 48.6
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.4e-08 62.0 73 49.3
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.2e-08 61.6 77 44.2
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 3.2e-08 61.6 73 45.2
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 3.2e-08 61.6 76 43.4
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 3.2e-08 61.6 73 43.8
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 3.2e-08 61.6 75 45.3
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.1e-08 61.2 78 44.9
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 4.1e-08 61.2 78 42.3
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 4.1e-08 61.2 75 44.0
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.4e-08 60.8 73 46.6
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 5.4e-08 60.8 76 44.7
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 5.4e-08 60.8 75 46.7
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 7.1e-08 60.5 75 45.3
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 7.1e-08 60.5 78 43.6
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 7.1e-08 60.5 72 48.6
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 9.2e-08 60.1 74 43.2
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 9.2e-08 60.1 74 48.6
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 9.2e-08 60.1 73 47.9
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 9.2e-08 60.1 73 47.9
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 9.2e-08 60.1 73 47.9
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.2e-07 59.7 78 42.3
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 1.2e-07 59.7 81 39.5
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.6e-07 59.3 76 44.7
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.6e-07 59.3 71 47.9
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 2.1e-07 58.9 75 45.3
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 2.1e-07 58.9 73 43.8
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 2.7e-07 58.5 81 42.0
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 2.7e-07 58.5 72 44.4
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 3.5e-07 58.2 78 39.7
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 4.6e-07 57.8 78 42.3
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 4.6e-07 57.8 77 42.9
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 4.6e-07 57.8 75 40.0
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 4.6e-07 57.8 81 38.3
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 6.0e-07 57.4 76 46.1
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 6.0e-07 57.4 71 45.1
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 6.0e-07 57.4 71 45.1
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 6.0e-07 57.4 72 44.4
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 7.8e-07 57.0 71 45.1
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 7.8e-07 57.0 72 45.8
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 7.8e-07 57.0 72 45.8
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 7.8e-07 57.0 72 45.8
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 7.8e-07 57.0 73 42.5
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 7.8e-07 57.0 73 43.8
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 7.8e-07 57.0 71 45.1
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 1.0e-06 56.6 78 42.3
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 1.0e-06 56.6 81 44.4
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.0e-06 56.6 81 39.5
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.0e-06 56.6 72 44.4
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.3e-06 56.2 73 46.6
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 1.3e-06 56.2 74 41.9
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.7e-06 55.8 79 44.3
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 3.0e-06 55.1 83 42.2
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 3.0e-06 55.1 76 44.7
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 3.0e-06 55.1 72 45.8
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 3.9e-06 54.7 72 47.2
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 3.9e-06 54.7 71 45.1
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 5.1e-06 54.3 73 42.5


User provided reference genes

Program Settings