Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 9.5e-58 227.6 231 100.0
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 1.5e-18 97.4 146 47.9
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 3.0e-11 73.2 84 52.4
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 2.5e-10 70.1 90 51.1
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 7.4e-10 68.6 85 52.9
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 1.3e-09 67.8 88 46.6
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.6e-09 67.4 90 45.6
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 1.6e-09 67.4 86 52.3
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 2.2e-09 67.0 89 48.3
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 2.8e-09 66.6 82 48.8
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 3.7e-09 66.2 85 51.8
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 3.7e-09 66.2 82 53.7
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 6.3e-09 65.5 82 48.8
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 6.3e-09 65.5 83 51.8
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 6.3e-09 65.5 89 49.4
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 8.2e-09 65.1 87 51.7
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 1.1e-08 64.7 82 47.6
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.1e-08 64.7 82 47.6
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 1.4e-08 64.3 80 52.5
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 1.4e-08 64.3 87 48.3
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 1.4e-08 64.3 82 47.6
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.4e-08 63.5 86 46.5
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 2.4e-08 63.5 83 50.6
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 3.1e-08 63.2 86 45.3
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 5.3e-08 62.4 83 49.4
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 5.3e-08 62.4 86 47.7
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 6.9e-08 62.0 90 47.8
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 6.9e-08 62.0 89 48.3
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 6.9e-08 62.0 83 50.6
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 9.0e-08 61.6 80 51.2
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 9.0e-08 61.6 78 48.7
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 9.0e-08 61.6 91 49.5
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 9.0e-08 61.6 83 48.2
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 9.0e-08 61.6 89 48.3
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 9.0e-08 61.6 89 48.3
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 9.0e-08 61.6 79 49.4
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 9.0e-08 61.6 98 44.9
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.2e-07 61.2 79 49.4
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 1.5e-07 60.8 79 48.1
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 1.5e-07 60.8 89 43.8
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.5e-07 60.8 82 45.1
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.5e-07 60.8 90 45.6
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.5e-07 60.8 87 46.0
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.5e-07 60.8 87 46.0
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.5e-07 60.8 94 44.7
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 1.5e-07 60.8 90 45.6
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 2.0e-07 60.5 90 45.6
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 2.0e-07 60.5 79 48.1
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 2.0e-07 60.5 80 50.0
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 2.0e-07 60.5 85 47.1
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.6e-07 60.1 87 46.0
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 2.6e-07 60.1 93 43.0
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 2.6e-07 60.1 78 43.6
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.6e-07 60.1 78 46.2
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 3.4e-07 59.7 79 45.6
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.4e-07 59.7 81 49.4
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 5.9e-07 58.9 92 46.7
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 5.9e-07 58.9 86 44.2
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 7.7e-07 58.5 86 45.3
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 7.7e-07 58.5 83 48.2
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 7.7e-07 58.5 83 49.4
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.0e-06 58.2 78 47.4
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.0e-06 58.2 80 47.5
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.0e-06 58.2 80 47.5
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 1.0e-06 58.2 80 47.5
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.0e-06 58.2 83 49.4
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.0e-06 58.2 83 43.4
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 1.3e-06 57.8 85 43.5
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.3e-06 57.8 82 46.3
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.3e-06 57.8 83 45.8
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 1.3e-06 57.8 90 43.3
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.7e-06 57.4 79 46.8
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.7e-06 57.4 93 40.9
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.7e-06 57.4 86 46.5
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.7e-06 57.4 86 46.5
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.7e-06 57.4 82 43.9
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.7e-06 57.4 94 42.6
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 2.2e-06 57.0 90 44.4
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 2.2e-06 57.0 82 47.6
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 2.9e-06 56.6 80 46.2
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 2.9e-06 56.6 79 46.8
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.9e-06 56.6 89 44.9
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 2.9e-06 56.6 89 43.8
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.9e-06 56.6 86 43.0
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 3.8e-06 56.2 79 55.7
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 5.0e-06 55.8 78 47.4
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 5.0e-06 55.8 82 48.8
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.0e-06 55.8 86 45.3
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 5.0e-06 55.8 80 48.8
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 6.5e-06 55.5 90 44.4
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 8.5e-06 55.1 93 40.9
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 8.5e-06 55.1 80 46.2
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 8.5e-06 55.1 74 48.6


User provided reference genes

Program Settings