Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 4.0e-29 131.0 77 100.0
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 2.1e-22 108.6 73 84.9
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 2.5e-15 85.1 75 73.3
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 2.5e-15 85.1 75 73.3
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 5.7e-15 84.0 75 73.3
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 2.8e-14 81.6 65 72.3
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 3.7e-14 81.3 72 69.4
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 4.8e-14 80.9 72 65.3
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 8.2e-14 80.1 65 70.8
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 8.2e-14 80.1 75 69.3
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 8.2e-14 80.1 73 63.0
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.8e-13 79.0 64 76.6
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 1.8e-13 79.0 75 70.7
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 2.4e-13 78.6 75 66.7
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.4e-13 78.6 72 63.9
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 2.4e-13 78.6 75 66.7
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 2.4e-13 78.6 75 70.7
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 3.1e-13 78.2 72 63.9
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 3.1e-13 78.2 67 67.2
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 3.1e-13 78.2 65 73.8
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.3e-13 77.4 73 64.4
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.3e-13 77.4 73 64.4
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 6.9e-13 77.0 72 66.7
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.2e-12 76.3 75 66.7
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.2e-12 76.3 75 66.7
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.2e-12 76.3 75 66.7
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.2e-12 76.3 72 59.7
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 1.5e-12 75.9 67 67.2
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 2.0e-12 75.5 75 60.0
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 2.0e-12 75.5 64 73.4
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 2.6e-12 75.1 72 68.1
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 2.6e-12 75.1 69 66.7
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 3.4e-12 74.7 64 70.3
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 4.5e-12 74.3 66 68.2
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 5.9e-12 73.9 75 65.3
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.9e-12 73.9 75 65.3
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 5.9e-12 73.9 72 65.3
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 7.7e-12 73.6 72 63.9
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.0e-11 73.2 72 65.3
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 1.0e-11 73.2 72 65.3
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 1.0e-11 73.2 67 67.2
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 1.0e-11 73.2 69 62.3
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.3e-11 72.8 66 68.2
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 1.7e-11 72.4 69 63.8
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-11 72.4 73 60.3
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-11 72.4 64 62.5
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 2.2e-11 72.0 69 62.3
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 2.9e-11 71.6 75 68.0
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 2.9e-11 71.6 72 63.9
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 2.9e-11 71.6 72 63.9
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 3.8e-11 71.2 72 63.9
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 3.8e-11 71.2 72 63.9
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 5.0e-11 70.9 66 65.2
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 5.0e-11 70.9 72 63.9
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 6.5e-11 70.5 67 62.7
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 8.5e-11 70.1 66 63.6
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 8.5e-11 70.1 72 62.5
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 8.5e-11 70.1 66 65.2
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 1.1e-10 69.7 69 68.1
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.1e-10 69.7 75 62.7
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 1.4e-10 69.3 75 65.3
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.4e-10 69.3 64 70.3
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.4e-10 69.3 64 70.3
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.4e-10 69.3 64 70.3
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.4e-10 69.3 64 70.3
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.9e-10 68.9 64 67.2
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 1.9e-10 68.9 65 64.6
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 3.2e-10 68.2 64 67.2
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 3.2e-10 68.2 72 58.3
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 5.5e-10 67.4 75 61.3
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 5.5e-10 67.4 75 60.0
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 5.5e-10 67.4 75 60.0
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 5.5e-10 67.4 66 63.6
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.2e-09 66.2 72 62.5
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 1.2e-09 66.2 64 65.6
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.6e-09 65.9 64 65.6
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 2.1e-09 65.5 67 67.2
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 2.1e-09 65.5 67 67.2
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 2.1e-09 65.5 67 67.2
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 67 67.2
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 2.1e-09 65.5 72 59.7
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 2.1e-09 65.5 64 67.2
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 64 67.2
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.1e-09 65.5 67 62.7
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 2.1e-09 65.5 75 61.3
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 2.1e-09 65.5 75 61.3
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 2.1e-09 65.5 75 64.0
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 2.7e-09 65.1 61 68.9
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 2.7e-09 65.1 75 62.7
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 2.7e-09 65.1 64 67.2
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 3.6e-09 64.7 61 67.2
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 3.6e-09 64.7 67 61.2
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 3.6e-09 64.7 75 62.7
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 4.6e-09 64.3 72 59.7
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 4.6e-09 64.3 73 56.2
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 6.1e-09 63.9 75 64.0
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 6.1e-09 63.9 68 58.8
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 6.1e-09 63.9 71 62.0
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 7.9e-09 63.5 72 62.5
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 7.9e-09 63.5 72 58.3
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 7.9e-09 63.5 76 61.8
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.0e-08 63.2 72 59.7
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.4e-08 62.8 67 61.2
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 1.4e-08 62.8 75 61.3
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.4e-08 62.8 58 60.3
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 1.8e-08 62.4 65 61.5
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.8e-08 62.4 72 63.9
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.0e-08 61.6 75 54.7
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 3.0e-08 61.6 74 55.4
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.9e-08 61.2 72 62.5
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 5.1e-08 60.8 72 59.7
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 6.7e-08 60.5 73 63.0
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.1e-07 59.7 74 58.1
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 1.1e-07 59.7 66 62.1
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 1.5e-07 59.3 74 58.1
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 2.0e-07 58.9 59 61.0
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 2.0e-07 58.9 115 45.2
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.6e-07 58.5 64 64.1
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 3.3e-07 58.2 72 56.9
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 3.3e-07 58.2 72 56.9
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 3.3e-07 58.2 72 58.3
unitig_749.g13471 Utricularia gibba HOM05D003549 ORTHO05D004223 3.3e-07 58.2 75 57.3
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 5.7e-07 57.4 67 56.7
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 7.4e-07 57.0 73 56.2
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 7.4e-07 57.0 72 55.6
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 9.7e-07 56.6 68 63.2
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.3e-06 56.2 72 56.9
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 1.3e-06 56.2 72 56.9
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.3e-06 56.2 72 56.9
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 1.3e-06 56.2 67 55.2
AagrBONN_evm.TU.Sc2ySwM_117.1875 Anthoceros agrestis HOM05D003549 ORTHO05D004223 1.7e-06 55.8 77 53.2
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.7e-06 55.8 64 57.8
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 1.7e-06 55.8 45 66.7
Peaxi162Scf00548g00225 Petunia axillaris HOM05D003549 ORTHO05D004223 2.2e-06 55.5 44 61.4
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 2.2e-06 55.5 75 60.0
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 3.7e-06 54.7 69 52.2
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 3.7e-06 54.7 40 70.0
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 3.7e-06 54.7 66 63.6
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 4.8e-06 54.3 74 52.7
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 4.8e-06 54.3 74 56.8
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 6.3e-06 53.9 56 60.7
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 6.3e-06 53.9 70 50.0
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 8.2e-06 53.5 64 62.5


User provided reference genes

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