Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 1.1e-119 433.3 222 100.0
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 4.8e-75 285.0 219 64.8
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 5.3e-74 281.6 219 63.9
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.0e-73 279.6 219 65.8
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.0e-73 279.6 203 72.4
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 4.5e-73 278.5 212 65.1
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 4.5e-73 278.5 218 62.8
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 7.7e-73 277.7 219 65.3
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 7.7e-73 277.7 219 65.3
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.0e-72 277.3 218 61.5
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.0e-72 277.3 217 65.0
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.0e-72 277.3 212 64.2
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 1.3e-72 276.9 212 65.1
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 2.2e-72 276.2 212 64.2
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 2.9e-72 275.8 218 61.9
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.9e-72 275.8 219 64.8
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 3.8e-72 275.4 219 64.4
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 5.0e-72 275.0 219 64.4
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 6.5e-72 274.6 218 61.9
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 8.5e-72 274.2 212 62.7
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.1e-71 273.9 215 63.3
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.5e-71 273.5 218 61.9
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.9e-71 273.1 216 63.0
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 2.5e-71 272.7 212 63.2
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 2.5e-71 272.7 212 65.1
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 3.2e-71 272.3 219 62.1
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 3.2e-71 272.3 215 63.3
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 4.2e-71 271.9 212 62.7
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 5.5e-71 271.6 220 61.4
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 5.5e-71 271.6 219 63.9
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 5.5e-71 271.6 218 60.6
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 7.2e-71 271.2 220 61.8
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.2e-70 270.4 212 62.7
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.1e-70 269.6 213 62.9
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 2.7e-70 269.2 209 64.6
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 3.6e-70 268.9 213 62.9
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 8.0e-70 267.7 211 62.6
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 8.0e-70 267.7 209 63.6
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 1.4e-69 266.9 213 62.4
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.4e-69 266.9 208 63.9
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.4e-69 266.9 212 62.7
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.4e-69 266.9 212 61.8
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 3.0e-69 265.8 212 60.4
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 5.2e-69 265.0 209 63.2
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 6.8e-69 264.6 211 61.6
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 8.8e-69 264.2 218 60.6
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 2.0e-68 263.1 212 59.4
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.0e-68 263.1 220 59.5
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.0e-68 263.1 220 59.5
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 3.4e-68 262.3 217 58.5
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 4.4e-68 261.9 212 62.7
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 7.5e-68 261.2 221 62.0
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 7.5e-68 261.2 193 64.2
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 7.5e-68 261.2 217 61.8
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.3e-67 260.4 212 60.8
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.8e-67 259.2 221 60.2
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 4.8e-67 258.5 215 59.1
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 6.3e-67 258.1 218 61.5
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 6.3e-67 258.1 213 62.9
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 1.4e-66 256.9 219 58.9
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.4e-66 256.9 217 58.5
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 3.1e-66 255.8 217 59.0
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 4.1e-66 255.4 213 58.7
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 9.1e-66 254.2 217 58.5
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.2e-65 253.8 211 60.2
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.6e-65 253.4 215 60.9
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 3.5e-65 252.3 212 59.0
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 4.5e-65 251.9 214 58.4
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 5.9e-65 251.5 212 60.4
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.9e-65 251.5 217 56.7
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 7.7e-65 251.1 212 61.3
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 1.0e-64 250.8 212 59.0
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.3e-64 250.4 213 62.4
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.3e-64 250.4 212 60.4
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 1.3e-64 250.4 242 54.1
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.7e-64 250.0 212 59.0
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 2.9e-64 249.2 212 60.8
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 6.5e-64 248.1 218 59.6
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 6.5e-64 248.1 216 58.3
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 2.5e-63 246.1 200 62.5
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 3.2e-63 245.7 221 56.6
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 4.2e-63 245.4 214 57.5
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 5.5e-63 245.0 214 57.9
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 5.5e-63 245.0 216 57.9
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 9.5e-63 244.2 211 58.3
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 9.5e-63 244.2 212 57.5
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 2.7e-62 242.7 221 56.1
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 2.7e-62 242.7 221 56.1
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.6e-62 242.3 215 55.8
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 4.7e-62 241.9 221 56.1
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 8.0e-62 241.1 208 59.6
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 1.0e-61 240.7 221 55.7
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 1.0e-61 240.7 221 55.7
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.8e-61 240.0 209 57.4
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 5.2e-61 238.4 212 56.6
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-60 237.3 244 52.5
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.4e-60 235.7 185 62.7
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 9.8e-60 234.2 215 53.5
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.3e-59 233.8 219 53.0
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.7e-59 233.4 217 55.3
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 1.7e-59 233.4 242 53.7
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 2.2e-59 233.0 220 57.3
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.7e-59 232.3 212 53.3
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-58 230.7 220 52.7
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 1.1e-58 230.7 220 52.7
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.4e-58 230.3 217 54.8
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 1.8e-58 229.9 181 63.5
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 3.1e-58 229.2 220 52.3
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 3.1e-58 229.2 220 52.3
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 3.1e-58 229.2 220 52.3
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 5.4e-58 228.4 210 56.2
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 7.0e-58 228.0 211 54.5
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 7.0e-58 228.0 211 54.5
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 2.0e-57 226.5 212 55.2
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.5e-57 225.3 199 57.8
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.5e-57 225.3 199 57.8
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 1.0e-56 224.2 184 59.2
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.0e-56 224.2 268 48.1
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.9e-56 222.6 194 62.4
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.1e-55 220.7 180 61.7
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 7.3e-55 218.0 218 52.3
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 3.0e-53 212.6 191 53.4
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.0e-53 212.6 204 50.5
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.5e-52 210.3 214 51.4
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 2.6e-52 209.5 150 66.7
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 5.7e-52 208.4 147 66.7
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 9.8e-52 207.6 215 47.0
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 2.9e-51 206.1 214 51.9
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 2.9e-51 206.1 214 51.9
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.4e-50 203.0 180 55.6
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.7e-49 199.5 219 49.3
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.7e-48 196.8 183 54.6
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 3.3e-47 192.6 210 46.2
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.8e-45 186.8 211 44.5
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 6.8e-45 184.9 152 57.2
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.4e-44 182.6 233 45.1
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.2e-43 179.9 153 58.8
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 6.4e-43 178.3 168 57.1
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 6.4e-43 178.3 150 52.0
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.0e-41 173.3 217 45.2
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 2.5e-39 166.4 186 48.4
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 5.6e-39 165.2 174 51.7
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.2e-36 157.5 143 55.2
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 5.8e-36 155.2 219 45.2
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 8.3e-35 151.4 181 44.8
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.2e-29 132.1 123 53.7
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 1.5e-28 130.6 148 44.6
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-27 127.5 112 53.6
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 7.1e-26 121.7 208 35.1
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 7.1e-26 121.7 109 54.1
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 7.8e-25 118.2 86 65.1
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 3.0e-24 116.3 88 62.5
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 7.8e-17 91.7 154 36.4
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 7.8e-17 91.7 154 36.4
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.0e-16 91.3 67 71.6
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 5.6e-15 85.5 67 65.7
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.1e-10 71.2 71 47.9
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 2.4e-10 70.1 68 54.4
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.2e-10 69.3 94 41.5
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 1.0e-08 64.7 46 54.3


User provided reference genes

Program Settings