Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 2.5e-77 292.0 143 100.0
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 2.0e-61 239.2 135 83.7
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.8e-54 216.1 140 72.9
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 6.7e-54 214.2 138 73.9
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.1e-51 206.8 139 72.7
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.1e-51 206.8 139 72.7
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.0e-49 200.3 136 71.3
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.7e-49 199.5 138 70.3
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.2e-49 199.1 137 68.6
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.8e-49 198.4 138 71.0
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 5.0e-49 198.0 135 68.1
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 6.5e-49 197.6 138 68.8
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 6.5e-49 197.6 138 71.7
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 8.5e-49 197.2 138 68.8
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.1e-48 196.8 138 70.3
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.5e-48 196.4 136 69.9
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 3.2e-48 195.3 136 69.1
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.2e-48 195.3 151 66.9
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 4.2e-48 194.9 137 68.6
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 4.2e-48 194.9 136 68.4
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 5.5e-48 194.5 138 68.8
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 5.5e-48 194.5 138 68.8
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 9.4e-48 193.7 135 68.9
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.2e-47 193.4 137 68.6
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 2.7e-47 192.2 138 68.8
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 3.6e-47 191.8 137 68.6
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 3.6e-47 191.8 138 67.4
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 4.7e-47 191.4 138 68.1
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 4.7e-47 191.4 135 66.7
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 6.1e-47 191.0 135 66.7
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.1e-47 191.0 135 66.7
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.0e-46 190.3 135 66.7
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.4e-46 189.9 136 66.2
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.8e-46 189.5 138 68.8
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.8e-46 189.5 135 66.7
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.8e-46 189.5 138 67.4
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.8e-46 189.5 143 67.1
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.0e-46 188.7 138 66.7
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 3.0e-46 188.7 138 68.1
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 4.0e-46 188.3 137 67.2
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 4.0e-46 188.3 138 66.7
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 4.0e-46 188.3 143 65.7
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 4.0e-46 188.3 135 65.9
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 4.0e-46 188.3 138 68.8
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.0e-46 188.3 137 66.4
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 5.2e-46 188.0 135 67.4
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 5.2e-46 188.0 135 65.9
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 6.8e-46 187.6 135 67.4
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.8e-46 187.2 135 65.2
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.2e-45 186.8 137 67.2
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.2e-45 186.8 137 65.7
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.5e-45 186.4 136 67.6
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 2.0e-45 186.0 138 65.9
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.0e-45 186.0 138 63.8
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.6e-45 185.7 137 65.7
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 3.4e-45 185.3 135 66.7
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 3.4e-45 185.3 135 65.2
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 4.4e-45 184.9 135 65.2
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 5.7e-45 184.5 136 64.7
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 7.5e-45 184.1 135 63.7
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 9.8e-45 183.7 140 66.4
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 9.8e-45 183.7 138 65.9
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.3e-44 183.3 140 65.7
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.3e-44 183.3 135 65.2
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.7e-44 183.0 137 67.9
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.7e-44 183.0 135 63.7
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.7e-44 183.0 136 64.7
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.7e-44 183.0 136 64.7
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 2.2e-44 182.6 135 65.9
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 2.2e-44 182.6 135 66.7
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 2.8e-44 182.2 135 64.4
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.8e-44 182.2 135 63.7
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 3.7e-44 181.8 136 66.9
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.8e-44 181.4 138 66.7
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 6.3e-44 181.0 138 64.5
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 6.3e-44 181.0 138 64.5
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 6.3e-44 181.0 138 65.9
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 6.3e-44 181.0 135 64.4
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 8.3e-44 180.6 138 64.5
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 8.3e-44 180.6 136 64.0
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.1e-43 180.3 140 65.0
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-43 180.3 138 64.5
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.1e-43 180.3 135 65.2
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.1e-43 180.3 136 63.2
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.4e-43 179.9 143 62.9
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.4e-43 179.9 138 65.2
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.4e-43 179.9 136 63.2
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.8e-43 179.5 138 63.8
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 2.4e-43 179.1 138 63.8
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 2.4e-43 179.1 138 63.8
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 2.4e-43 179.1 138 63.8
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 2.4e-43 179.1 138 63.8
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 2.4e-43 179.1 138 63.8
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 2.4e-43 179.1 135 63.7
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.4e-43 179.1 137 62.8
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 3.1e-43 178.7 135 63.7
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 3.1e-43 178.7 135 63.7
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 3.1e-43 178.7 138 63.8
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 5.4e-43 177.9 138 64.5
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 7.0e-43 177.6 138 63.8
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 9.1e-43 177.2 174 54.6
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 9.1e-43 177.2 138 63.8
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 9.1e-43 177.2 137 63.5
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 1.6e-42 176.4 176 54.0
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.0e-42 176.0 135 63.7
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 2.0e-42 176.0 137 62.0
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 2.7e-42 175.6 136 61.0
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.7e-42 175.6 135 64.4
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 5.9e-42 174.5 135 63.0
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.3e-41 172.6 135 64.4
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.9e-41 172.2 146 61.6
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.8e-41 171.8 143 60.1
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 1.2e-39 166.8 135 61.5
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 3.6e-39 165.2 173 52.0
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 8.0e-39 164.1 151 55.6
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 1.7e-36 156.4 135 60.7
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 7.8e-34 147.5 194 44.3
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.3e-33 146.7 100 71.0
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 5.0e-33 144.8 103 71.8
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 5.6e-32 141.4 135 54.8
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 9.5e-32 140.6 103 67.0
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 1.6e-31 139.8 139 54.7
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.6e-31 139.8 112 59.8
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 6.1e-31 137.9 137 53.3
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 1.8e-30 136.3 140 52.9
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 8.9e-30 134.0 103 67.0
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.7e-26 122.5 135 50.4
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 2.7e-26 122.5 135 50.4
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 3.5e-26 122.1 87 66.7
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.9e-25 118.6 135 49.6
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 8.6e-25 117.5 88 65.9
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 2.1e-23 112.8 93 61.3
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.1e-23 112.8 222 38.3
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.2e-22 108.2 63 81.0
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.5e-21 106.7 157 43.3
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 5.8e-21 104.8 86 60.5
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 3.5e-18 95.5 136 43.4
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 1.1e-14 84.0 109 45.9
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 2.6e-13 79.3 122 37.7
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.1e-11 73.9 119 33.6
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 9.2e-11 70.9 119 32.8
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 4.6e-10 68.6 61 57.4
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.9e-08 63.2 62 54.8
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.6e-08 61.6 62 53.2
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.4e-06 56.2 136 26.5


User provided reference genes

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