Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 5.4e-56 220.7 107 100.0
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 7.3e-37 157.1 107 68.2
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 4.7e-36 154.5 107 64.5
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 2.0e-34 149.1 107 63.6
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 3.4e-34 148.3 107 61.7
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.9e-32 142.5 107 62.6
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 4.2e-32 141.4 108 62.0
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 7.1e-32 140.6 107 62.6
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 3.9e-30 134.8 107 57.0
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 3.9e-30 134.8 108 59.3
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 6.6e-30 134.0 107 56.1
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 6.6e-30 134.0 107 56.1
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 6.6e-30 134.0 107 56.1
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 1.5e-29 132.9 107 57.0
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.5e-29 132.9 108 56.5
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.9e-29 132.5 107 54.2
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 58.3
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 3.3e-29 131.7 108 56.5
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 3.3e-29 131.7 108 57.4
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 3.3e-29 131.7 107 55.1
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.3e-29 131.3 107 51.4
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 7.3e-29 130.6 107 52.3
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 9.6e-29 130.2 107 52.3
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 1.6e-28 129.4 107 54.2
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 2.1e-28 129.0 107 52.3
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.8e-28 128.6 107 52.3
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 2.8e-28 128.6 103 56.3
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.6e-28 128.3 107 51.4
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 3.6e-28 128.3 107 53.3
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 3.6e-28 128.3 108 57.4
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 4.8e-28 127.9 107 53.3
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 6.2e-28 127.5 107 54.2
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 6.2e-28 127.5 108 55.6
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 6.2e-28 127.5 108 52.8
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 8.1e-28 127.1 107 55.1
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 8.1e-28 127.1 107 52.3
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 8.1e-28 127.1 108 54.6
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 8.1e-28 127.1 107 51.4
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 8.1e-28 127.1 107 54.2
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.1e-27 126.7 108 52.8
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 1.1e-27 126.7 108 53.7
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.1e-27 126.7 108 57.4
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 1.1e-27 126.7 108 56.5
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.4e-27 126.3 107 54.2
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.8e-27 125.9 107 52.3
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.8e-27 125.9 107 54.2
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 1.8e-27 125.9 107 57.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 1.8e-27 125.9 85 67.1
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 2.4e-27 125.6 108 56.5
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 3.1e-27 125.2 107 54.2
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 3.1e-27 125.2 107 53.3
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 4.0e-27 124.8 108 54.6
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 4.0e-27 124.8 107 51.4
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 54.6
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 53.7
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 5.3e-27 124.4 108 52.8
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 5.3e-27 124.4 107 54.2
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 6.9e-27 124.0 107 50.5
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 6.9e-27 124.0 107 53.3
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 6.9e-27 124.0 107 55.1
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 6.9e-27 124.0 107 47.7
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 9.0e-27 123.6 108 56.5
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 9.0e-27 123.6 107 50.5
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.2e-26 123.2 108 52.8
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.2e-26 123.2 108 54.6
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 53.7
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.0e-26 122.5 108 52.8
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 2.0e-26 122.5 107 54.2
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 2.6e-26 122.1 108 53.7
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 2.6e-26 122.1 108 50.9
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 3.4e-26 121.7 108 52.8
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 3.4e-26 121.7 108 54.6
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 3.4e-26 121.7 107 51.4
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 4.5e-26 121.3 107 50.5
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 4.5e-26 121.3 107 50.5
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 4.5e-26 121.3 107 50.5
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 4.5e-26 121.3 107 51.4
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 7.6e-26 120.6 108 50.9
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 7.6e-26 120.6 107 50.5
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 7.6e-26 120.6 107 51.4
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 7.6e-26 120.6 87 63.2
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 9.9e-26 120.2 108 50.9
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.3e-25 119.8 108 52.8
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.3e-25 119.8 107 52.3
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.3e-25 119.8 107 49.5
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.3e-25 119.8 107 53.3
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.7e-25 119.4 108 52.8
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 2.9e-25 118.6 109 50.5
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 2.9e-25 118.6 107 49.5
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 2.9e-25 118.6 107 49.5
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 2.9e-25 118.6 108 51.9
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.9e-25 118.6 106 50.0
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 2.9e-25 118.6 108 49.1
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 4.9e-25 117.9 107 51.4
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.1e-24 116.7 107 52.3
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.4e-24 116.3 107 50.5
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.4e-24 116.3 106 50.0
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 1.9e-24 115.9 107 49.5
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 1.9e-24 115.9 107 52.3
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 2.4e-24 115.5 108 55.6
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 4.2e-24 114.8 107 46.7
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 5.4e-24 114.4 109 50.5
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 7.1e-24 114.0 108 50.9
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 9.3e-24 113.6 107 48.6
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.2e-23 113.2 98 52.0
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 1.6e-23 112.8 107 50.5
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.7e-23 112.1 108 50.0
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 2.7e-23 112.1 108 50.0
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.7e-23 112.1 107 51.4
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 3.5e-23 111.7 107 46.7
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 3.5e-23 111.7 107 45.8
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 4.6e-23 111.3 107 45.8
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 2.3e-22 109.0 107 44.9
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 3.0e-22 108.6 94 55.3
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 3.9e-22 108.2 107 47.7
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 5.1e-22 107.8 85 58.8
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 5.1e-22 107.8 108 48.1
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 6.7e-22 107.5 108 50.0
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 8.7e-22 107.1 95 50.5
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.9e-21 105.9 86 59.3
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 2.5e-21 105.5 101 47.5
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 4.3e-21 104.8 86 54.7
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 4.3e-21 104.8 106 45.3
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 5.6e-21 104.4 108 44.4
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 5.6e-21 104.4 85 54.1
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 5.6e-21 104.4 98 51.0
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 9.6e-21 103.6 85 52.9
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.3e-20 103.2 85 52.9
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 2.8e-20 102.1 102 45.1
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.8e-20 102.1 83 53.0
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.8e-20 102.1 83 53.0
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 4.8e-20 101.3 85 54.1
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 8.1e-20 100.5 111 44.1
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 3.1e-19 98.6 85 50.6
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 3.1e-19 98.6 85 52.9
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.2e-18 96.7 85 52.9
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.6e-18 95.5 86 51.2
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 3.4e-18 95.1 85 50.6
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 3.4e-18 95.1 85 50.6
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 4.5e-18 94.7 100 44.0
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 7.6e-18 94.0 90 48.9
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.2e-17 92.4 84 48.8
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 3.8e-17 91.7 100 43.0
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 3.8e-17 91.7 86 48.8
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 3.8e-17 91.7 111 47.7
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 6.4e-17 90.9 64 62.5
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 6.4e-17 90.9 64 62.5
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 8.4e-17 90.5 87 50.6
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 2.4e-16 89.0 107 43.0
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 5.5e-16 87.8 89 47.2
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 2.7e-15 85.5 71 50.7
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.0e-14 83.6 65 55.4
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 2.3e-14 82.4 85 44.7
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 1.6e-12 76.3 109 37.6
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 2.4e-11 72.4 78 42.3
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 5.5e-08 61.2 87 37.9
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 1.2e-07 60.1 57 49.1


User provided reference genes

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