Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0253050 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D014227 0.0e+00 1363.6 783 100.0
Os06g0126100 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D014227 1.0e-71 275.8 720 39.9
Zm00001eb378670 Zea mays HOM05D008480 ORTHO05D014227 4.1e-60 237.3 736 38.0
Os10g0534600 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D014227 5.2e-39 167.2 265 48.3
Zm00001eb269340 Zea mays HOM05D008480 ORTHO05D014227 2.2e-29 135.2 251 41.8
Os01g0689975 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D025987 3.7e-21 107.8 216 43.1
Os02g0787250 Oryza sativa ssp. japonica HOM05D017598 ORTHO05D016367 8.3e-21 106.7 288 39.9
SHI12945 Sapria himalayana HOM05D008480 ORTHO05D014227 1.2e-16 92.8 244 33.6
Os05g0550900 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D025987 2.0e-14 85.5 160 46.9
Os01g0136850 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D025987 3.4e-14 84.7 217 40.6
Zm00001eb117800 Zea mays HOM05D008480 ORTHO05D029783 1.1e-12 79.7 188 43.6
Os12g0595900 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D016367 4.6e-11 74.3 176 43.2
Zm00001eb163180 Zea mays HOM05D008480 ORTHO05D441677 5.1e-10 70.9 275 35.3
SGA_v2.0_scaffold202G41464 Striga asiatica HOM05D008480 ORTHO05D025987 1.5e-09 69.3 166 41.6
Zm00001eb333700 Zea mays HOM05D008480 ORTHO05D444439 7.3e-09 67.0 111 48.6
SGA_v2.0_scaffold122G33354 Striga asiatica HOM05D017598 ORTHO05D016367 9.5e-09 66.6 171 34.5
Os11g0232400 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D295517 1.2e-08 66.2 160 41.9
SGA_v2.0_scaffold4G02055 Striga asiatica HOM05D017598 ORTHO05D016367 2.8e-08 65.1 113 45.1
Os12g0609025 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D037103 8.9e-07 60.1 212 37.7
Os03g0228901 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D049821 1.5e-06 59.3 157 37.6
Zm00001eb283410 Zea mays HOM05D008480 ORTHO05D037059 1.5e-06 59.3 336 29.8
Zm00001eb201890 Zea mays HOM05D008480 ORTHO05D016367 2.6e-06 58.5 249 34.9
Os06g0253350 Oryza sativa ssp. japonica HOM05D008480 ORTHO05D029783 4.4e-06 57.8 166 38.0
SGA_v2.0_scaffold75G25029 Striga asiatica HOM05D008480 ORTHO05D014227 9.9e-06 56.6 111 37.8


User provided reference genes

Program Settings