Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0250600 Oryza sativa ssp. japonica HOM05D006309 ORTHO05D007937 5.3e-53 210.7 101 100.0
Gohir.D08G174300 Gossypium hirsutum HOM05D006309 ORTHO05D007937 4.5e-44 181.0 94 88.3
Gorai.004G182000 Gossypium raimondii HOM05D006309 ORTHO05D007937 4.5e-44 181.0 94 88.3
Duzib205G1677 Durio zibethinus HOM05D006309 ORTHO05D007937 5.8e-44 180.6 94 87.2
CAN.G637.25 Capsicum annuum HOM05D006309 ORTHO05D007937 1.3e-43 179.5 96 85.4
Nitab4.5_0000936g0050 Nicotiana tabacum HOM05D006309 ORTHO05D007937 2.2e-43 178.7 96 85.4
Hund05518 Selenicereus undatus HOM05D006309 ORTHO05D007937 2.2e-43 178.7 93 84.9
Ah.06g190700 Amaranthus hybridus HOM05D006309 ORTHO05D007937 4.9e-43 177.6 93 82.8
Peaxi162Scf00171g00731 Petunia axillaris HOM05D006309 ORTHO05D007937 4.9e-43 177.6 96 84.4
Nitab4.5_0004454g0020 Nicotiana tabacum HOM05D006309 ORTHO05D007937 6.5e-43 177.2 96 84.4
Solyc03g098120.3 Solanum lycopersicum HOM05D006309 ORTHO05D007937 8.4e-43 176.8 96 82.3
Sopen03g028820 Solanum pennellii HOM05D006309 ORTHO05D007937 8.4e-43 176.8 96 82.3
PGSC0003DMG400031051 Solanum tuberosum HOM05D006309 ORTHO05D007937 8.4e-43 176.8 96 82.3
Manes.09G181100 Manihot esculenta HOM05D006309 ORTHO05D007937 1.1e-42 176.4 95 85.3
Gohir.A08G153400 Gossypium hirsutum HOM05D006309 ORTHO05D007937 1.4e-42 176.0 94 87.2
AUR62000475 Chenopodium quinoa HOM05D006309 ORTHO05D007937 1.9e-42 175.6 93 81.7
Dinv24513 Davidia involucrata HOM05D006309 ORTHO05D007937 4.2e-42 174.5 94 84.0
QL03p010963 Quercus lobata HOM05D006309 ORTHO05D007937 4.2e-42 174.5 94 84.0
Oeu061901.1 Olea europaea HOM05D006309 ORTHO05D007937 5.5e-42 174.1 94 83.0
Sc16g0009400 Simmondsia chinensis HOM05D006309 ORTHO05D007937 5.5e-42 174.1 94 80.9
Cpa.g.sc48.50 Carica papaya HOM05D006309 ORTHO05D007937 9.3e-42 173.3 94 85.1
Thecc.03G310900 Theobroma cacao HOM05D006309 ORTHO05D007937 9.3e-42 173.3 93 83.9
Carub.0002s0712 Capsella rubella HOM05D006309 ORTHO05D007937 1.2e-41 172.9 95 81.1
Cc02_g35850 Coffea canephora HOM05D006309 ORTHO05D007937 1.6e-41 172.6 94 83.0
Nn7g36656 Nelumbo nucifera HOM05D006309 ORTHO05D007937 1.6e-41 172.6 94 84.0
AL1G67090 Arabidopsis lyrata HOM05D006309 ORTHO05D007937 2.1e-41 172.2 95 80.0
Haze_03988 Corylus avellana HOM05D006309 ORTHO05D007937 2.1e-41 172.2 94 83.0
PGR083G2709 Punica granatum HOM05D006309 ORTHO05D007937 2.1e-41 172.2 93 83.9
vmacro16416 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 2.7e-41 171.8 93 82.8
CARHR288700 Cardamine hirsuta HOM05D006309 ORTHO05D007937 3.5e-41 171.4 93 81.7
CiPaw.07G036200 Carya illinoinensis HOM05D006309 ORTHO05D007937 3.5e-41 171.4 93 82.8
Psat6g155680 Pisum sativum HOM05D006309 ORTHO05D007937 3.5e-41 171.4 93 82.8
Prupe.6G304700 Prunus persica HOM05D006309 ORTHO05D007937 3.5e-41 171.4 94 81.9
Rhsim11G0105200 Rhododendron simsii HOM05D006309 ORTHO05D007937 3.5e-41 171.4 93 82.8
AT1G57540 Arabidopsis thaliana HOM05D006309 ORTHO05D007937 4.6e-41 171.0 95 78.9
AUR62017099 Chenopodium quinoa HOM05D006309 ORTHO05D007937 4.6e-41 171.0 93 80.6
Ca_10200_v3 Cicer arietinum L. HOM05D006309 ORTHO05D007937 4.6e-41 171.0 93 81.7
MD12G1199900 Malus domestica HOM05D006309 ORTHO05D007937 4.6e-41 171.0 94 80.9
Rhsim11G0104500 Rhododendron simsii HOM05D006309 ORTHO05D007937 4.6e-41 171.0 93 82.8
Sc09g0002420 Simmondsia chinensis HOM05D006309 ORTHO05D007937 4.6e-41 171.0 94 79.8
EL10Ac4g09558 Beta vulgaris HOM05D006309 ORTHO05D007937 1.0e-40 169.9 95 80.0
Ciclev10013195m.g Citrus clementina HOM05D006309 ORTHO05D007937 2.3e-40 168.7 94 80.9
CiPaw.04G111200 Carya illinoinensis HOM05D006309 ORTHO05D007937 3.9e-40 167.9 93 80.6
arahy.Tifrunner.gnm1.ann1.RC3JIS Arachis hypogaea HOM05D006309 ORTHO05D007937 5.1e-40 167.5 93 79.6
Thhalv10010969m.g Eutrema salsugineum HOM05D006309 ORTHO05D007937 5.1e-40 167.5 94 78.7
Lalb_Chr02g0147551 Lupinus albus HOM05D006309 ORTHO05D007937 5.1e-40 167.5 94 77.7
Medtr1g484930 Medicago truncatula HOM05D006309 ORTHO05D007937 5.1e-40 167.5 93 80.6
Potri.005G002900 Populus trichocarpa HOM05D006309 ORTHO05D007937 5.1e-40 167.5 95 81.1
VMungo0720G0633 Vigna mungo HOM05D006309 ORTHO05D007937 5.1e-40 167.5 93 80.6
Aa31LG2G11310 Aethionema arabicum HOM05D006309 ORTHO05D007937 6.7e-40 167.2 94 78.7
BcaB07g31141 Brassica carinata HOM05D006309 ORTHO05D007937 6.7e-40 167.2 94 77.7
BcaC04g22081 Brassica carinata HOM05D006309 ORTHO05D007937 6.7e-40 167.2 94 77.7
A09p18900 Brassica napus HOM05D006309 ORTHO05D007937 6.7e-40 167.2 94 77.7
C09p23680 Brassica napus HOM05D006309 ORTHO05D007937 6.7e-40 167.2 94 77.7
BraA09t37510Z Brassica rapa HOM05D006309 ORTHO05D007937 6.7e-40 167.2 94 77.7
CSS0019637 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 6.7e-40 167.2 93 81.7
CSS0033999 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 6.7e-40 167.2 93 81.7
Hma1.2p1_0759F.1_g213920 Hydrangea macrophylla HOM05D006309 ORTHO05D007937 6.7e-40 167.2 93 81.7
Sp1g28800 Schrenkiella parvula HOM05D006309 ORTHO05D007937 6.7e-40 167.2 94 77.7
THA.LOC104820476 Tarenaya hassleriana HOM05D006309 ORTHO05D007937 6.7e-40 167.2 93 77.4
TAR636G2194 Trochodendron aralioides HOM05D006309 ORTHO05D007937 8.7e-40 166.8 94 79.8
arahy.Tifrunner.gnm1.ann1.P9U7KY Arachis hypogaea HOM05D006309 ORTHO05D007937 1.1e-39 166.4 93 78.5
arahy.Tifrunner.gnm1.ann1.VGN228 Arachis hypogaea HOM05D006309 ORTHO05D007937 1.1e-39 166.4 93 78.5
Sp2g05970 Schrenkiella parvula HOM05D006309 ORTHO05D007937 1.1e-39 166.4 94 76.6
GSVIVG01031328001 Vitis vinifera HOM05D006309 ORTHO05D007937 1.1e-39 166.4 93 79.6
Atru.chr12.1543 Acer truncatum HOM05D006309 ORTHO05D007937 1.5e-39 166.0 94 79.8
BolC9t55290H Brassica oleracea HOM05D006309 ORTHO05D007937 1.5e-39 166.0 94 76.6
ClCG02G014650 Citrullus lanatus HOM05D006309 ORTHO05D007937 1.5e-39 166.0 94 78.7
Lalb_Chr21g0310061 Lupinus albus HOM05D006309 ORTHO05D007937 1.5e-39 166.0 94 76.6
Phvul.007G205000 Phaseolus vulgaris HOM05D006309 ORTHO05D007937 1.5e-39 166.0 93 79.6
Sed0021183 Sechium edule HOM05D006309 ORTHO05D007937 1.5e-39 166.0 94 79.8
ECA233G1704 Erigeron canadensis HOM05D006309 ORTHO05D007937 1.9e-39 165.6 94 80.9
vmacro01669 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 1.9e-39 165.6 95 80.0
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 3.3e-39 164.9 94 79.8
TPR.G2591 Trifolium pratense HOM05D006309 ORTHO05D007937 3.3e-39 164.9 93 78.5
CDE09G0003 Ceratophyllum demersum HOM05D006309 ORTHO05D007937 4.3e-39 164.5 95 74.7
Glyma.20G090800 Glycine max HOM05D006309 ORTHO05D007937 4.3e-39 164.5 93 79.6
Glyma.20G092200 Glycine max HOM05D006309 ORTHO05D007937 4.3e-39 164.5 93 79.6
Lj5g0003279 Lotus japonicus HOM05D006309 ORTHO05D007937 4.3e-39 164.5 93 80.6
RcHm_v2.0_Chr3g0458531 Rosa chinensis HOM05D006309 ORTHO05D007937 4.3e-39 164.5 94 77.7
MELO3C004152.2 Cucumis melo HOM05D006309 ORTHO05D007937 5.7e-39 164.1 94 79.8
FvH4_6g08490 Fragaria vesca HOM05D006309 ORTHO05D007937 5.7e-39 164.1 94 77.7
FAN02G0285 Fragaria x ananassa HOM05D006309 ORTHO05D007937 5.7e-39 164.1 94 77.7
FAN05G1622 Fragaria x ananassa HOM05D006309 ORTHO05D007937 5.7e-39 164.1 94 77.7
FAN09G1610 Fragaria x ananassa HOM05D006309 ORTHO05D007937 5.7e-39 164.1 94 77.7
FAN14G3239 Fragaria x ananassa HOM05D006309 ORTHO05D007937 5.7e-39 164.1 94 77.7
Migut.H01672 Erythranthe guttata HOM05D006309 ORTHO05D007937 7.4e-39 163.7 93 78.5
Actinidia22855 Actinidia chinensis HOM05D006309 ORTHO05D007937 1.3e-38 162.9 93 79.6
TWI36G0052 Tripterygium wilfordii HOM05D006309 ORTHO05D007937 2.8e-38 161.8 94 77.7
SalBow5G3054 Salvia bowleyana HOM05D006309 ORTHO05D007937 6.3e-38 160.6 94 76.6
ATR0796G010 Amborella trichopoda HOM05D006309 ORTHO05D007937 8.2e-38 160.2 94 78.7
Aqoxy2G02488 Aquilegia oxysepala HOM05D006309 ORTHO05D007937 8.2e-38 160.2 93 74.2
CANSAT54G2801 Cannabis sativa HOM05D006309 ORTHO05D007937 1.4e-37 159.5 94 77.7
CsaV3_2G007320 Cucumis sativus L. HOM05D006309 ORTHO05D007937 1.4e-37 159.5 93 78.5
FvH4_2g19190 Fragaria vesca HOM05D006309 ORTHO05D007937 2.4e-37 158.7 94 75.5
FAN24G3038 Fragaria x ananassa HOM05D006309 ORTHO05D007937 2.4e-37 158.7 94 75.5
unitig_62.g23615 Utricularia gibba HOM05D006309 ORTHO05D007937 6.9e-37 157.1 93 76.3
HanXRQChr08g0212181 Helianthus annuus HOM05D006309 ORTHO05D007937 1.5e-36 156.0 88 79.5
Sabra13G0001700 Salix brachista HOM05D006309 ORTHO05D007937 2.0e-36 155.6 113 68.1
FAN15G2822 Fragaria x ananassa HOM05D006309 ORTHO05D007937 4.5e-36 154.5 94 73.4
Prupe.8G045300 Prunus persica HOM05D006309 ORTHO05D007937 1.0e-35 153.3 94 75.5
PSO210G0390 Papaver somniferum HOM05D006309 ORTHO05D007937 1.3e-35 152.9 96 74.0
PSO761G0726 Papaver somniferum HOM05D006309 ORTHO05D007937 1.3e-35 152.9 96 74.0
DCAR_007528 Daucus carota HOM05D006309 ORTHO05D007937 2.2e-35 152.1 108 67.6
Lj4g0016187 Lotus japonicus HOM05D006309 ORTHO05D007937 5.0e-35 151.0 93 74.2
arahy.Tifrunner.gnm1.ann1.01IKZ7 Arachis hypogaea HOM05D006309 ORTHO05D007937 6.5e-35 150.6 126 58.7
Sabra05G0000300 Salix brachista HOM05D006309 ORTHO05D007937 1.2e-33 146.4 138 55.8
Sabra05G0014400 Salix brachista HOM05D006309 ORTHO05D007937 1.2e-33 146.4 138 55.8
EL10Ac4g07573 Beta vulgaris HOM05D006309 ORTHO05D007937 1.6e-33 146.0 93 73.1
Cfa012394 Carpinus fangiana HOM05D006309 ORTHO05D007937 2.7e-33 145.2 84 76.2
SalBow4G0401 Salvia bowleyana HOM05D006309 ORTHO05D007937 6.1e-33 144.1 117 60.7
SalBow4G1963 Salvia bowleyana HOM05D006309 ORTHO05D007937 6.1e-33 144.1 117 60.7
SalBow4G2407 Salvia bowleyana HOM05D006309 ORTHO05D007937 6.1e-33 144.1 117 60.7
MBI18_g10373_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 6.7e-32 140.6 94 73.4
Dinv30948 Davidia involucrata HOM05D006309 ORTHO05D007937 1.1e-29 133.3 70 84.3
Mapoly0075s0044 Marchantia polymorpha HOM05D006309 ORTHO05D007937 3.9e-24 114.8 94 54.3
Pp3c8_1240 Physcomitrium patens HOM05D006309 ORTHO05D007937 4.8e-22 107.8 93 52.7
Zm00001eb239560 Zea mays HOM05D006309 ORTHO05D007937 1.8e-21 105.9 50 94.0
COL.COLO4_16932 Corchorus olitorius HOM05D006309 ORTHO05D007937 3.6e-17 91.7 94 54.3
HanXRQChr06g0180851 Helianthus annuus HOM05D006309 ORTHO05D007937 3.6e-17 91.7 50 80.0
HanXRQChr16g0506271 Helianthus annuus HOM05D006309 ORTHO05D007937 3.6e-17 91.7 50 80.0
MBI06_g06498_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 3.0e-16 88.6 51 78.4
Glyma.09G093300 Glycine max HOM05D006309 ORTHO05D000504 8.2e-14 80.5 59 61.0
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 3.1e-13 78.6 49 69.4
BNapus_Darmor_BZH_scaffold_223p00020 Brassica napus HOM05D006309 ORTHO05D007937 5.5e-10 67.8 39 74.4
Potri.013G002301 Populus trichocarpa HOM05D006309 ORTHO05D007937 1.0e-08 63.5 41 73.2
TAR627G1128 Trochodendron aralioides HOM05D006309 ORTHO05D007937 3.7e-06 55.1 37 73.0


User provided reference genes

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