Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0249800 Oryza sativa ssp. japonica HOM05D004004 ORTHO05D003284 4.5e-96 354.8 200 100.0
Zm00001eb127390 Zea mays HOM05D008255 ORTHO05D003284 2.2e-26 123.2 88 76.1
Os01g0249700 Oryza sativa ssp. japonica HOM05D004004 ORTHO05D003284 2.7e-24 116.3 78 71.8
TAR381G0545 Trochodendron aralioides HOM05D000607 ORTHO05D003284 5.8e-11 72.0 101 42.6
Hma1.2p1_0775F.1_g216490 Hydrangea macrophylla HOM05D004004 ORTHO05D003284 2.9e-10 69.7 102 42.2
Manes.05G156200 Manihot esculenta HOM05D000607 ORTHO05D003284 6.4e-10 68.6 106 34.0
Rhsim06G0029400 Rhododendron simsii HOM05D004004 ORTHO05D003284 6.4e-10 68.6 101 41.6
FvH4_2g14710 Fragaria vesca HOM05D004004 ORTHO05D003284 2.4e-09 66.6 75 50.7
FAN15G2223 Fragaria x ananassa HOM05D004004 ORTHO05D003284 2.4e-09 66.6 75 50.7
FAN24G1883 Fragaria x ananassa HOM05D004004 ORTHO05D003284 2.4e-09 66.6 75 50.7
Potri.002G032800 Populus trichocarpa HOM05D004004 ORTHO05D003284 2.4e-09 66.6 106 38.7
Eucgr.F01872 Eucalyptus grandis HOM05D004004 ORTHO05D003284 3.2e-09 66.2 108 36.1
Os03g0372600 Oryza sativa ssp. japonica HOM05D008255 ORTHO05D003284 4.1e-09 65.9 74 48.6
RcHm_v2.0_Chr6g0301541 Rosa chinensis HOM05D004004 ORTHO05D003284 5.4e-09 65.5 105 39.0
Oeu000178.1 Olea europaea HOM05D004004 ORTHO05D003284 9.2e-09 64.7 112 39.3
CiPaw.08G059800 Carya illinoinensis HOM05D004004 ORTHO05D003284 1.2e-08 64.3 103 37.9
Zm00001eb018100 Zea mays HOM05D008255 ORTHO05D003284 1.6e-08 63.9 87 43.7
Potri.005G230300 Populus trichocarpa HOM05D004004 ORTHO05D003284 2.1e-08 63.5 104 38.5
CANSAT25G0030 Cannabis sativa HOM05D004004 ORTHO05D003284 2.7e-08 63.2 101 39.6
PGR031G0975 Punica granatum HOM05D004004 ORTHO05D003284 2.7e-08 63.2 104 35.6
PGR031G3823 Punica granatum HOM05D004004 ORTHO05D003284 2.7e-08 63.2 83 48.2
Prupe.1G375500 Prunus persica HOM05D004004 ORTHO05D003284 3.5e-08 62.8 101 35.6
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 3.5e-08 62.8 100 42.0
Actinidia38530 Actinidia chinensis HOM05D004004 ORTHO05D003284 4.6e-08 62.4 118 33.1
TAR633G0312 Trochodendron aralioides HOM05D004004 ORTHO05D003284 4.6e-08 62.4 73 43.8
TWI12G0300 Tripterygium wilfordii HOM05D000607 ORTHO05D003284 6.0e-08 62.0 75 45.3
PSO478G5073 Papaver somniferum HOM05D000607 ORTHO05D000518 7.8e-08 61.6 83 47.0
Prupe.8G018500 Prunus persica HOM05D004004 ORTHO05D003284 1.0e-07 61.2 75 45.3
SEGI_40269 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 1.0e-07 61.2 132 34.1
Haze_22537 Corylus avellana HOM05D003425 ORTHO05D003897 1.3e-07 60.8 107 35.5
Haze_22541 Corylus avellana HOM05D004004 ORTHO05D003284 1.3e-07 60.8 107 35.5
MD15G1023400 Malus domestica HOM05D004004 ORTHO05D003284 1.3e-07 60.8 79 38.0
Manes.13G076069 Manihot esculenta HOM05D004004 ORTHO05D003284 1.3e-07 60.8 102 39.2
Actinidia22522 Actinidia chinensis HOM05D004004 ORTHO05D003284 1.7e-07 60.5 101 37.6
CANSAT80G0904 Cannabis sativa HOM05D004004 ORTHO05D003284 1.7e-07 60.5 78 42.3
Hund13999 Selenicereus undatus HOM05D004004 ORTHO05D003284 1.7e-07 60.5 80 45.0
Atru.chr12.1510 Acer truncatum HOM05D004004 ORTHO05D003284 2.3e-07 60.1 78 47.4
AUR62033201 Chenopodium quinoa HOM05D004004 ORTHO05D003284 2.3e-07 60.1 73 41.1
MD08G1026800 Malus domestica HOM05D004004 ORTHO05D003284 3.0e-07 59.7 101 34.7
PSO478G3873 Papaver somniferum HOM05D000607 ORTHO05D000518 3.0e-07 59.7 78 42.3
Atru.chr13.424 Acer truncatum HOM05D004004 ORTHO05D003284 3.9e-07 59.3 101 33.7
Ciclev10002820m.g Citrus clementina HOM05D004004 ORTHO05D003284 3.9e-07 59.3 102 35.3
FvH4_2g14740 Fragaria vesca HOM05D004004 ORTHO05D003284 3.9e-07 59.3 80 42.5
MBI16_g26156_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 3.9e-07 59.3 100 37.0
Hund05396 Selenicereus undatus HOM05D004004 ORTHO05D003284 3.9e-07 59.3 73 42.5
QL03p011303 Quercus lobata HOM05D004004 ORTHO05D003284 5.1e-07 58.9 119 37.0
VMungo0647G0080 Vigna mungo HOM05D003425 ORTHO05D003897 5.1e-07 58.9 73 42.5
Nn1g04908 Nelumbo nucifera HOM05D000607 ORTHO05D003284 6.6e-07 58.5 99 38.4
Actinidia22847 Actinidia chinensis HOM05D004004 ORTHO05D003284 8.7e-07 58.2 81 43.2
PSO782G1183 Papaver somniferum HOM05D000607 ORTHO05D000518 8.7e-07 58.2 85 40.0
Hund16675 Selenicereus undatus HOM05D000607 ORTHO05D000518 8.7e-07 58.2 85 40.0
PSO782G2562 Papaver somniferum HOM05D000607 ORTHO05D000518 1.1e-06 57.8 79 39.2
Potri.018G148900 Populus trichocarpa HOM05D004004 ORTHO05D003284 1.1e-06 57.8 102 33.3
Atru.chr9.2122 Acer truncatum HOM05D000607 ORTHO05D000518 1.5e-06 57.4 80 40.0
EL10As8g23910 Beta vulgaris HOM05D004004 ORTHO05D003284 1.5e-06 57.4 68 39.7
Zm00001eb156800 Zea mays HOM05D008255 ORTHO05D003284 1.5e-06 57.4 70 48.6
Aqoxy4G00091 Aquilegia oxysepala HOM05D004004 ORTHO05D003284 1.9e-06 57.0 87 40.2
PSO478G1901 Papaver somniferum HOM05D000607 ORTHO05D000518 1.9e-06 57.0 78 39.7
PSO782G4438 Papaver somniferum HOM05D000607 ORTHO05D000518 1.9e-06 57.0 100 37.0
Actinidia01655 Actinidia chinensis HOM05D004004 ORTHO05D003284 2.5e-06 56.6 81 38.3
AUR62015036 Chenopodium quinoa HOM05D004004 ORTHO05D003284 2.5e-06 56.6 131 30.5
CANSAT21G1330 Cannabis sativa HOM05D000607 ORTHO05D000518 3.3e-06 56.2 80 46.2
CDE06G0543 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 3.3e-06 56.2 101 38.6
CDE06G0974 Ceratophyllum demersum HOM05D004004 ORTHO05D003284 3.3e-06 56.2 92 40.2
Haze_15557 Corylus avellana HOM05D000607 ORTHO05D000518 3.3e-06 56.2 83 43.4
MBI10_g00769_MAGBIO Magnolia biondii HOM05D004004 ORTHO05D003284 3.3e-06 56.2 68 39.7
PSO782G0981 Papaver somniferum HOM05D000607 ORTHO05D000518 3.3e-06 56.2 75 38.7
TPR.G33513 Trifolium pratense HOM05D000607 ORTHO05D000518 3.3e-06 56.2 80 36.2
MELO3C005711.2 Cucumis melo HOM05D000607 ORTHO05D000518 4.3e-06 55.8 98 43.9
MD02G1143000 Malus domestica HOM05D004004 ORTHO05D003284 4.3e-06 55.8 87 36.8
PSO675G0710 Papaver somniferum HOM05D004004 ORTHO05D003284 4.3e-06 55.8 68 41.2
Potri.006G079400 Populus trichocarpa HOM05D004004 ORTHO05D003284 4.3e-06 55.8 102 38.2
Prupe.6G030600 Prunus persica HOM05D000913 ORTHO05D000687 4.3e-06 55.8 96 39.6
MSTRG.4835 Avicennia marina HOM05D000607 ORTHO05D000518 5.6e-06 55.5 79 46.8
Ciclev10022806m.g Citrus clementina HOM05D000607 ORTHO05D000518 5.6e-06 55.5 79 44.3
Migut.N01465 Erythranthe guttata HOM05D000607 ORTHO05D000518 5.6e-06 55.5 80 45.0
Eucgr.H01341 Eucalyptus grandis HOM05D008255 ORTHO05D003284 5.6e-06 55.5 59 49.2
PSO782G0004 Papaver somniferum HOM05D000607 ORTHO05D000518 5.6e-06 55.5 89 38.2
PSO782G1566 Papaver somniferum HOM05D000607 ORTHO05D000518 5.6e-06 55.5 89 38.2
PSO782G1585 Papaver somniferum HOM05D000607 ORTHO05D000518 5.6e-06 55.5 89 38.2
PSO782G4468 Papaver somniferum HOM05D000607 ORTHO05D000518 5.6e-06 55.5 89 38.2
PSO782G4991 Papaver somniferum HOM05D000607 ORTHO05D000518 5.6e-06 55.5 89 38.2
PSO782G5097 Papaver somniferum HOM05D000607 ORTHO05D000518 5.6e-06 55.5 89 38.2
PSO782G5608 Papaver somniferum HOM05D000607 ORTHO05D000518 5.6e-06 55.5 83 45.8
Gorai.004G160000 Gossypium raimondii HOM05D000607 ORTHO05D000518 7.3e-06 55.1 78 43.6
Medtr6g049320 Medicago truncatula HOM05D000607 ORTHO05D000518 7.3e-06 55.1 93 40.9
PSO478G2661 Papaver somniferum HOM05D000607 ORTHO05D000518 7.3e-06 55.1 88 38.6
PSO478G4469 Papaver somniferum HOM05D000607 ORTHO05D000518 7.3e-06 55.1 88 38.6
TPR.G33546 Trifolium pratense HOM05D000607 ORTHO05D000518 7.3e-06 55.1 80 37.5
BolC5t28841H Brassica oleracea HOM05D000607 ORTHO05D000518 9.6e-06 54.7 83 42.2
CANSAT01G1672 Cannabis sativa HOM05D004004 ORTHO05D003284 9.6e-06 54.7 92 37.0
PSO478G0459 Papaver somniferum HOM05D000607 ORTHO05D000518 9.6e-06 54.7 78 39.7
PSO541G0719 Papaver somniferum HOM05D004004 ORTHO05D003284 9.6e-06 54.7 73 39.7
PGR031G1465 Punica granatum HOM05D000607 ORTHO05D000518 9.6e-06 54.7 80 41.2
QL02p009395 Quercus lobata HOM05D004004 ORTHO05D003284 9.6e-06 54.7 86 41.9
Hund27245 Selenicereus undatus HOM05D000607 ORTHO05D000518 9.6e-06 54.7 80 41.2
SEGI_19145 Sequoiadendron giganteum HOM05D004004 ORTHO05D003284 9.6e-06 54.7 111 36.0


User provided reference genes

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