Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 2.7e-262 908.3 513 100.0
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.2e-164 583.9 507 65.5
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 4.4e-164 582.0 520 64.6
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 7.2e-90 335.5 533 43.2
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 6.3e-86 322.4 528 42.0
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 1.1e-85 321.6 520 43.8
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 5.9e-84 315.8 535 42.4
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.3e-83 314.7 558 42.1
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 2.9e-83 313.5 542 41.0
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.8e-83 313.2 536 42.5
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 5.0e-83 312.8 538 42.6
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 5.5e-82 309.3 550 42.0
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.2e-81 308.1 524 43.3
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 8.8e-80 302.0 535 41.7
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.2e-79 301.6 535 40.9
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 2.6e-79 300.4 521 42.6
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.5e-79 298.9 520 42.1
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 1.3e-78 298.1 532 40.4
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 2.8e-78 297.0 543 39.4
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 4.8e-78 296.2 528 40.5
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 6.3e-78 295.8 562 40.6
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.8e-77 294.3 535 41.1
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.8e-77 294.3 535 40.0
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.4e-77 293.9 535 39.4
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 3.1e-77 293.5 525 40.2
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 5.4e-77 292.7 540 42.0
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 7.0e-77 292.4 539 40.4
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.2e-76 291.6 528 40.3
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.2e-76 291.6 569 39.7
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 2.0e-76 290.8 545 39.8
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.0e-75 288.5 543 39.0
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.7e-75 287.7 522 39.7
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.9e-75 287.0 529 40.6
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 8.5e-75 285.4 533 40.3
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 3.2e-74 283.5 522 44.8
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 3.2e-74 283.5 540 40.4
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 4.2e-74 283.1 525 41.0
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 5.5e-74 282.7 530 39.6
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 7.2e-74 282.3 542 40.0
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.1e-73 280.8 537 38.7
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.1e-73 280.8 540 40.2
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 4.7e-73 279.6 461 42.7
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 6.1e-73 279.3 539 38.6
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 1.8e-72 277.7 538 39.0
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.8e-72 277.7 588 38.1
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 3.0e-72 276.9 541 38.4
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 4.0e-72 276.6 538 40.1
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 4.0e-72 276.6 552 38.2
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 4.0e-72 276.6 533 37.9
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 2.0e-71 274.2 541 38.8
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 3.4e-71 273.5 530 38.7
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 5.7e-71 272.7 517 38.9
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 7.5e-71 272.3 532 40.0
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 7.5e-71 272.3 534 39.5
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 1.3e-70 271.6 563 41.9
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 3.7e-70 270.0 541 39.0
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 3.7e-70 270.0 563 37.7
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 3.7e-70 270.0 553 38.0
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 3.7e-70 270.0 551 37.9
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 6.3e-70 269.2 533 38.3
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 8.3e-70 268.9 519 38.9
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 8.3e-70 268.9 542 37.5
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 1.4e-69 268.1 534 37.8
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.4e-69 268.1 547 36.6
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 2.4e-69 267.3 537 38.5
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 3.1e-69 266.9 526 40.9
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 9.2e-69 265.4 585 37.9
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 5.9e-68 262.7 520 39.0
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 7.7e-68 262.3 568 37.5
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 1.0e-67 261.9 539 37.7
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.3e-67 261.5 524 38.7
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 5.0e-67 259.6 554 36.5
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 6.6e-67 259.2 536 38.4
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 8.6e-67 258.8 545 37.1
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.1e-66 258.5 530 37.4
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 2.5e-66 257.3 540 37.4
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 4.3e-66 256.5 570 38.1
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.6e-65 254.6 559 36.9
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 4.7e-65 253.1 546 36.6
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 8.0e-65 252.3 544 36.6
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 2.3e-64 250.8 540 43.0
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.0e-64 250.4 536 38.4
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 6.8e-64 249.2 500 38.0
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 8.9e-64 248.8 515 35.3
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 4.4e-63 246.5 568 35.9
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 5.7e-63 246.1 211 64.0
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 8.3e-62 242.3 511 35.0
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.4e-61 240.7 526 36.1
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.2e-61 240.4 436 38.5
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.7e-60 237.3 291 48.8
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 7.8e-60 235.7 537 36.3
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.7e-59 234.6 511 35.6
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 5.0e-59 233.0 512 35.7
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.6e-58 229.6 280 47.5
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 9.5e-58 228.8 511 35.8
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.2e-57 228.4 565 36.5
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 2.8e-57 227.3 521 33.8
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 6.2e-57 226.1 466 38.6
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 2.3e-56 224.2 294 45.6
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.7e-54 218.0 528 34.1
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.4e-53 214.9 447 34.0
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 4.1e-53 213.4 517 33.7
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 7.0e-53 212.6 575 35.0
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.2e-52 211.8 451 36.8
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 8.6e-51 205.7 276 48.2
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 3.1e-48 197.2 486 32.5
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 4.0e-48 196.8 296 42.9
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 3.4e-47 193.7 292 42.5
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.5e-47 192.6 494 34.8
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.7e-46 191.4 550 33.5
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 1.6e-44 184.9 159 64.8
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 6.6e-43 179.5 478 33.9
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.9e-42 177.9 179 59.2
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 5.6e-42 176.4 494 32.6
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 5.6e-42 176.4 494 32.6
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.2e-41 175.3 506 38.7
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 4.4e-39 166.8 564 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 2.9e-38 164.1 592 33.3
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 7.1e-37 159.5 225 46.2
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.6e-33 148.3 389 37.0
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 4.2e-29 133.7 442 33.5
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 5.4e-29 133.3 71 87.3
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 3.5e-28 130.6 404 32.2
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 5.1e-27 126.7 181 48.1
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.5e-26 125.2 442 32.1
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 6.2e-25 119.8 219 35.6
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.6e-23 114.4 291 33.0
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.2e-15 89.0 168 42.3
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 2.9e-14 84.3 132 44.7
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 2.7e-12 77.8 57 73.7
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 2.7e-12 77.8 57 73.7
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 2.7e-12 77.8 57 73.7
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 2.7e-12 77.8 57 73.7
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 2.7e-12 77.8 57 73.7
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 2.7e-12 77.8 57 73.7
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 3.5e-12 77.4 164 27.4
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 3.3e-10 70.9 203 36.5
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 2.8e-09 67.8 114 42.1
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 3.1e-08 64.3 254 27.6


User provided reference genes

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