Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0198100 Oryza sativa ssp. japonica HOM05D002350 ORTHO05D000091 8.0e-258 893.3 456 100.0
Zm00001eb088530 Zea mays HOM05D054927 ORTHO05D000091 9.6e-62 241.9 490 38.2
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 1.2e-35 155.2 181 42.5
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 1.2e-35 155.2 187 44.4
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 3.5e-35 153.7 185 44.9
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 4.5e-35 153.3 249 39.0
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 1.7e-34 151.4 249 36.1
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 8.5e-34 149.1 232 39.2
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.1e-33 148.7 200 41.0
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 1.1e-33 148.7 200 40.0
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 1.4e-33 148.3 222 40.1
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 1.9e-33 147.9 277 39.0
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 3.2e-33 147.1 225 36.9
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 5.5e-33 146.4 189 46.6
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 7.2e-33 146.0 179 41.3
Lj7C663T4 Lonicera japonica HOM05D002350 ORTHO05D000091 9.4e-33 145.6 184 44.6
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 1.6e-32 144.8 189 43.9
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 2.7e-32 144.1 191 41.9
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 2.7e-32 144.1 181 40.3
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 3.6e-32 143.7 201 41.3
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 4.7e-32 143.3 217 36.9
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 8.0e-32 142.5 180 43.9
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 1.0e-31 142.1 184 45.7
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 1.4e-31 141.7 205 39.0
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 1.4e-31 141.7 181 41.4
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 1.8e-31 141.4 181 43.1
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 5.2e-31 139.8 242 37.6
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 8.8e-31 139.0 230 38.7
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 1.1e-30 138.7 264 35.2
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 2.0e-30 137.9 183 44.3
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 3.3e-30 137.1 230 38.3
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 3.3e-30 137.1 245 38.4
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 5.7e-30 136.3 179 45.8
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 7.4e-30 136.0 180 43.9
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 9.7e-30 135.6 181 38.1
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 9.7e-30 135.6 181 38.1
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 9.7e-30 135.6 207 38.2
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 1.3e-29 135.2 180 42.2
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 1.7e-29 134.8 178 43.3
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 2.2e-29 134.4 179 41.3
A07p00750 Brassica napus HOM05D002350 ORTHO05D000091 2.2e-29 134.4 181 37.6
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 2.8e-29 134.0 176 42.0
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 3.7e-29 133.7 195 37.9
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 3.7e-29 133.7 186 42.5
Eucgr.C03764 Eucalyptus grandis HOM05D002350 ORTHO05D000091 3.7e-29 133.7 181 41.4
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 3.7e-29 133.7 220 38.6
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 3.7e-29 133.7 178 43.8
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 4.8e-29 133.3 181 37.6
Rhsim03G0237700 Rhododendron simsii HOM05D002350 ORTHO05D000091 4.8e-29 133.3 185 41.6
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 8.2e-29 132.5 179 40.8
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 1.4e-28 131.7 245 35.5
RcHm_v2.0_Chr2g0091671 Rosa chinensis HOM05D002350 ORTHO05D000091 1.4e-28 131.7 185 42.7
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 1.4e-28 131.7 184 41.3
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 1.8e-28 131.3 179 44.1
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 2.4e-28 131.0 181 37.0
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 3.1e-28 130.6 183 41.0
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 5.3e-28 129.8 179 38.5
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 5.3e-28 129.8 200 38.5
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 5.3e-28 129.8 179 40.8
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 5.3e-28 129.8 182 42.3
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 7.0e-28 129.4 181 39.2
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 1.2e-27 128.6 184 39.7
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 1.6e-27 128.3 181 37.6
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 1.6e-27 128.3 181 40.3
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 1.6e-27 128.3 195 37.9
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 1.6e-27 128.3 183 42.1
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 2.0e-27 127.9 231 35.5
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 2.6e-27 127.5 181 38.7
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 2.6e-27 127.5 453 28.3
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 2.6e-27 127.5 180 41.1
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 2.6e-27 127.5 182 39.6
Aqoxy6G02291 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 3.5e-27 127.1 172 40.7
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 3.5e-27 127.1 189 42.9
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 4.5e-27 126.7 196 40.3
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 5.9e-27 126.3 179 39.1
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 5.9e-27 126.3 182 41.8
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 7.7e-27 125.9 144 45.8
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 1.3e-26 125.2 186 38.7
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 1.7e-26 124.8 178 37.6
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 1.7e-26 124.8 182 42.3
A07p00780 Brassica napus HOM05D002350 ORTHO05D000091 2.2e-26 124.4 177 39.0
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 2.2e-26 124.4 253 34.4
Hund26256 Selenicereus undatus HOM05D002350 ORTHO05D000091 2.2e-26 124.4 179 41.9
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 2.9e-26 124.0 181 38.1
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 2.9e-26 124.0 181 38.1
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 2.9e-26 124.0 180 42.2
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.9e-26 124.0 180 41.7
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 3.8e-26 123.6 177 39.0
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 3.8e-26 123.6 177 39.0
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.8e-26 123.6 180 42.2
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.8e-26 123.6 180 42.2
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 5.0e-26 123.2 178 40.4
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 8.5e-26 122.5 181 37.6
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 8.5e-26 122.5 177 37.9
Sopen06g017060 Solanum pennellii HOM05D002350 ORTHO05D000091 8.5e-26 122.5 185 39.5
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 1.1e-25 122.1 240 34.2
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 1.1e-25 122.1 213 37.1
SalBow5G3880 Salvia bowleyana HOM05D002350 ORTHO05D000091 1.1e-25 122.1 184 37.5
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 1.5e-25 121.7 203 39.9
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.9e-25 121.3 220 33.6
Cpa.g.sc40.69 Carica papaya HOM05D002350 ORTHO05D000091 1.9e-25 121.3 183 38.8
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 2.5e-25 120.9 217 33.6
HanXRQChr16g0503801 Helianthus annuus HOM05D002350 ORTHO05D000091 2.5e-25 120.9 185 37.3
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 5.5e-25 119.8 216 36.6
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 7.2e-25 119.4 184 39.1
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 1.2e-24 118.6 245 32.2
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 1.2e-24 118.6 221 33.0
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 1.6e-24 118.2 219 36.5
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.6e-24 118.2 184 38.6
PSO832G0190 Papaver somniferum HOM05D002350 ORTHO05D000091 1.6e-24 118.2 163 41.7
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 4.7e-24 116.7 197 34.5
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 4.7e-24 116.7 181 34.8
RcHm_v2.0_Chr2g0091721 Rosa chinensis HOM05D002350 ORTHO05D000091 6.1e-24 116.3 178 39.3
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 8.0e-24 115.9 245 31.8
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.8e-23 114.8 179 37.4
Peaxi162Scf00665g00310 Petunia axillaris HOM05D002350 ORTHO05D000091 1.8e-23 114.8 183 36.6
PGSC0003DMG402000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 1.8e-23 114.8 321 29.9
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 2.3e-23 114.4 181 36.5
Nitab4.5_0000165g0040 Nicotiana tabacum HOM05D002350 ORTHO05D000091 5.2e-23 113.2 197 35.0
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 6.7e-23 112.8 182 37.4
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 8.8e-23 112.5 181 37.0
Migut.N01382 Erythranthe guttata HOM05D002350 ORTHO05D000091 8.8e-23 112.5 178 35.4
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 2.0e-22 111.3 138 45.7
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 5.7e-22 109.8 211 32.7
BolC8t51797H Brassica oleracea HOM05D002350 ORTHO05D000091 9.7e-22 109.0 185 34.6
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 1.7e-21 108.2 236 33.9
Nitab4.5_0001354g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 4.8e-21 106.7 266 31.2
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 6.3e-21 106.3 123 42.3
DCAR_010692 Daucus carota HOM05D002350 ORTHO05D000091 1.8e-20 104.8 188 36.7
BolC7t40573H Brassica oleracea HOM05D002350 ORTHO05D000091 4.1e-20 103.6 184 35.3
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 5.3e-20 103.2 193 36.3
DCAR_018431 Daucus carota HOM05D002350 ORTHO05D000091 7.0e-20 102.8 180 36.1
Oeu064188.1 Olea europaea HOM05D002350 ORTHO05D000091 9.1e-20 102.4 199 34.2
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 9.1e-20 102.4 437 25.4
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 2.0e-19 101.3 209 35.4
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 3.5e-19 100.5 177 35.6
Peaxi162Scf00824g00114 Petunia axillaris HOM05D002350 ORTHO05D000091 4.5e-19 100.1 241 30.3
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 5.9e-19 99.8 175 36.0
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 1.7e-18 98.2 215 30.2
BcaC06g36662 Brassica carinata HOM05D002350 ORTHO05D000091 1.7e-18 98.2 183 34.4
AUR62010903 Chenopodium quinoa HOM05D002350 ORTHO05D000091 2.2e-18 97.8 190 35.8
EL10Ac8g18396 Beta vulgaris HOM05D002350 ORTHO05D000091 6.5e-18 96.3 151 39.7
AUR62010902 Chenopodium quinoa HOM05D002350 ORTHO05D000091 6.5e-18 96.3 166 34.9
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 1.1e-17 95.5 180 36.7
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 1.1e-17 95.5 177 33.9
AUR62021425 Chenopodium quinoa HOM05D002350 ORTHO05D000091 4.2e-17 93.6 185 34.1
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 4.2e-17 93.6 247 28.3
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 2.1e-16 91.3 221 30.3
A01p21050 Brassica napus HOM05D002350 ORTHO05D000091 1.2e-14 85.5 175 32.0
BraA09t40056Z Brassica rapa HOM05D002350 ORTHO05D000091 1.2e-14 85.5 175 32.0
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 7.5e-14 82.8 72 52.8
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 2.8e-13 80.9 71 53.5
SEGI_26853 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 3.7e-13 80.5 189 30.7
DCAR_018379 Daucus carota HOM05D002350 ORTHO05D000091 6.3e-13 79.7 289 26.3
AUR62021424 Chenopodium quinoa HOM05D002350 ORTHO05D000091 8.3e-13 79.3 177 33.3
MBI04_g17297_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 4.1e-12 77.0 73 53.4
CAN.G160.39 Capsicum annuum HOM05D002350 ORTHO05D000091 1.5e-09 68.6 105 35.2
MD15G1195300 Malus domestica HOM05D002350 ORTHO05D000091 2.5e-09 67.8 91 45.1
SEGI_17992 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 5.5e-09 66.6 100 39.0
A10p27580 Brassica napus HOM05D002350 ORTHO05D000091 9.5e-09 65.9 137 32.8
CSS0047158 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.0e-07 62.4 98 34.7
MBI04_g40931_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 2.3e-07 61.2 139 31.7
BcaB03g16780 Brassica carinata HOM05D002350 ORTHO05D000091 3.0e-07 60.8 158 27.8
SMO146G0176 Selaginella moellendorffii HOM05D002350 ORTHO05D000091 3.0e-07 60.8 205 26.3
CSS0028801 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 7.5e-06 56.2 55 50.9
VMungo0720G0058 Vigna mungo HOM05D007130 ORTHO05D002078 7.5e-06 56.2 66 43.9
Hund28809 Selenicereus undatus HOM05D002350 ORTHO05D000091 9.8e-06 55.8 86 38.4
Hund28811 Selenicereus undatus HOM05D002350 ORTHO05D000091 9.8e-06 55.8 86 38.4


User provided reference genes

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