Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0188900 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 6.1e-82 307.4 148 100.0
Os01g0175400 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 3.3e-72 275.0 133 97.0
Os01g0189100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 6.7e-65 250.8 143 83.2
Os03g0679800 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 4.1e-22 108.6 135 43.0
Os12g0599900 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.0e-20 104.0 126 45.2
Cc02_g30810 Coffea canephora HOM05D001789 ORTHO05D001755 1.3e-20 103.6 123 40.7
Os12g0600100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.3e-20 103.6 128 43.8
Psat4g049680 Pisum sativum HOM05D001789 ORTHO05D001755 9.5e-19 97.4 138 36.2
Aqoxy3G03319 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 1.2e-18 97.1 129 40.3
Aqoxy7G03203 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 1.2e-18 97.1 129 41.9
CDE06G0784 Ceratophyllum demersum HOM05D001789 ORTHO05D001755 1.2e-18 97.1 121 42.1
Aqoxy4G01666 Aquilegia oxysepala HOM05D001053 ORTHO05D001755 4.7e-18 95.1 129 40.3
Peaxi162Scf00282g00618 Petunia axillaris HOM05D001789 ORTHO05D001755 8.1e-18 94.4 123 37.4
Os09g0123500 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.1e-17 94.0 137 38.7
Os02g0493300 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.4e-17 93.6 134 41.0
Os12g0636100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.8e-17 93.2 127 41.7
Aqoxy4G01760 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 3.1e-17 92.4 129 39.5
Zm00001eb034120 Zea mays HOM05D001789 ORTHO05D001755 3.1e-17 92.4 130 40.0
Aqoxy5G00332 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 4.0e-17 92.0 126 38.1
SalBow8G1668 Salvia bowleyana HOM05D001789 ORTHO05D001755 5.2e-17 91.7 106 45.3
Cpa.g.sc617.3 Carica papaya HOM05D001789 ORTHO05D001755 1.2e-16 90.5 140 37.1
Aqoxy3G02736 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 2.6e-16 89.4 112 42.0
Os03g0680400 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 3.4e-16 89.0 132 43.2
Os03g0680100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 9.9e-16 87.4 107 44.9
Gohir.A13G169500 Gossypium hirsutum HOM05D001789 ORTHO05D001755 1.3e-15 87.0 123 35.8
Gohir.D13G175000 Gossypium hirsutum HOM05D001789 ORTHO05D001755 1.3e-15 87.0 123 35.8
Gorai.013G200300 Gossypium raimondii HOM05D001789 ORTHO05D001755 1.3e-15 87.0 123 35.8
Manes.05G085300 Manihot esculenta HOM05D001789 ORTHO05D001755 1.7e-15 86.7 126 38.9
GSVIVG01036270001 Vitis vinifera HOM05D001789 ORTHO05D001755 1.7e-15 86.7 123 37.4
EL10Ac5g10456 Beta vulgaris HOM05D001789 ORTHO05D001755 2.2e-15 86.3 128 39.8
Os03g0680566 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 2.2e-15 86.3 131 39.7
ClCG02G016750 Citrullus lanatus HOM05D001789 ORTHO05D001755 2.9e-15 85.9 143 35.0
vmacro14863 Vaccinium macrocarpon HOM05D001789 ORTHO05D001755 3.7e-15 85.5 125 36.0
AUR62032245 Chenopodium quinoa HOM05D001789 ORTHO05D001755 4.9e-15 85.1 128 37.5
Dinv34576 Davidia involucrata HOM05D001789 ORTHO05D010416 4.9e-15 85.1 125 37.6
Manes.05G085350 Manihot esculenta HOM05D001789 ORTHO05D001755 4.9e-15 85.1 125 38.4
PSO384G0184 Papaver somniferum HOM05D001789 ORTHO05D001755 4.9e-15 85.1 128 37.5
PSO421G0436 Papaver somniferum HOM05D001789 ORTHO05D001755 4.9e-15 85.1 137 39.4
PSO478G0068 Papaver somniferum HOM05D001789 ORTHO05D001755 6.4e-15 84.7 128 39.8
PSO339G1265 Papaver somniferum HOM05D001789 ORTHO05D001755 1.1e-14 84.0 104 40.4
Zm00001eb031110 Zea mays HOM05D001789 ORTHO05D001755 2.4e-14 82.8 95 47.4
Rhsim01G0268800 Rhododendron simsii HOM05D001789 ORTHO05D001755 3.2e-14 82.4 123 35.8
PSO170G3495 Papaver somniferum HOM05D001789 ORTHO05D001755 4.1e-14 82.0 137 38.0
Lsat_1_v5_gn_2_64421 Lactuca sativa HOM05D001789 ORTHO05D001755 5.4e-14 81.6 123 36.6
TAR636G0648 Trochodendron aralioides HOM05D001789 ORTHO05D001755 5.4e-14 81.6 140 36.4
Ah.06g192110 Amaranthus hybridus HOM05D001789 ORTHO05D001755 7.1e-14 81.3 121 37.2
Dinv20290 Davidia involucrata HOM05D001789 ORTHO05D001755 7.1e-14 81.3 123 35.8
PSO017G4288 Papaver somniferum HOM05D001789 ORTHO05D001755 7.1e-14 81.3 123 37.4
SalBow4G1357 Salvia bowleyana HOM05D001789 ORTHO05D001755 7.1e-14 81.3 124 37.9
PSO339G0965 Papaver somniferum HOM05D001789 ORTHO05D001755 9.2e-14 80.9 128 35.9
PSO384G4611 Papaver somniferum HOM05D001789 ORTHO05D001755 9.2e-14 80.9 125 34.4
PSO461G0078 Papaver somniferum HOM05D001789 ORTHO05D001755 9.2e-14 80.9 128 37.5
SalBow6G5439 Salvia bowleyana HOM05D001789 ORTHO05D001755 9.2e-14 80.9 124 37.1
PSO170G3794 Papaver somniferum HOM05D001789 ORTHO05D001755 1.2e-13 80.5 131 35.9
PSO339G0875 Papaver somniferum HOM05D001789 ORTHO05D001755 1.2e-13 80.5 128 35.2
PSO384G2589 Papaver somniferum HOM05D001789 ORTHO05D001755 1.2e-13 80.5 128 35.9
SalBow2G0365 Salvia bowleyana HOM05D001789 ORTHO05D001755 1.2e-13 80.5 124 37.1
SalBow7G3954 Salvia bowleyana HOM05D001789 ORTHO05D001755 1.2e-13 80.5 124 37.1
Os02g0494400 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.6e-13 80.1 142 35.2
Os02g0492000 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 4.6e-13 78.6 134 35.8
ATR0665G154 Amborella trichopoda HOM05D001789 ORTHO05D001755 6.0e-13 78.2 127 37.0
Os02g0493050 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.3e-12 77.0 134 35.1
Os03g0621400 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.3e-12 77.0 104 41.3
PSO063G3347 Papaver somniferum HOM05D001789 ORTHO05D001755 1.3e-12 77.0 128 34.4
PSO782G4634 Papaver somniferum HOM05D001789 ORTHO05D001755 1.7e-12 76.6 128 35.9
SalBow4G0100 Salvia bowleyana HOM05D001789 ORTHO05D001755 1.7e-12 76.6 126 31.0
SalBow4G2090 Salvia bowleyana HOM05D001789 ORTHO05D001755 1.7e-12 76.6 124 33.9
COL.COLO4_05094 Corchorus olitorius HOM05D001789 ORTHO05D001755 2.3e-12 76.3 130 36.2
SalBow4G2988 Salvia bowleyana HOM05D001789 ORTHO05D001755 3.9e-12 75.5 124 33.1
ECA238G2814 Erigeron canadensis HOM05D001789 ORTHO05D001755 5.1e-12 75.1 123 33.3
CSS0016190 Camellia sinensis var. sinensis HOM05D001789 ORTHO05D001755 8.6e-12 74.3 123 33.3
PSO063G6555 Papaver somniferum HOM05D001789 ORTHO05D001755 8.6e-12 74.3 135 33.3
SalBow4G0281 Salvia bowleyana HOM05D001789 ORTHO05D001755 8.6e-12 74.3 104 38.5
Haze_04374 Corylus avellana HOM05D001789 ORTHO05D001755 1.1e-11 73.9 124 33.9
Sopen01g040860 Solanum pennellii HOM05D001789 ORTHO05D001755 1.1e-11 73.9 123 34.1
COL.COLO4_03560 Corchorus olitorius HOM05D001789 ORTHO05D001755 1.5e-11 73.6 125 33.6
CiPaw.07G068600 Carya illinoinensis HOM05D001789 ORTHO05D001755 2.5e-11 72.8 123 33.3
COL.COLO4_08283 Corchorus olitorius HOM05D001789 ORTHO05D001755 2.5e-11 72.8 130 31.5
Os12g0634900 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 2.5e-11 72.8 130 35.4
Atru.chr2.837 Acer truncatum HOM05D001789 ORTHO05D001755 3.3e-11 72.4 105 37.1
PSO017G4820 Papaver somniferum HOM05D001789 ORTHO05D001755 4.3e-11 72.0 140 35.0
SalBow4G2708 Salvia bowleyana HOM05D001789 ORTHO05D001755 4.3e-11 72.0 124 33.1
SalBow4G2812 Salvia bowleyana HOM05D001789 ORTHO05D001755 4.3e-11 72.0 125 33.6
Lju50C34T11 Lonicera japonica HOM05D001789 ORTHO05D001755 5.6e-11 71.6 123 32.5
Os03g0680200 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 5.6e-11 71.6 126 33.3
PSO832G3911 Papaver somniferum HOM05D001789 ORTHO05D001755 5.6e-11 71.6 128 34.4
Os03g0680600 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 9.5e-11 70.9 91 45.1
Os05g0103600 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.6e-10 70.1 134 34.3
Sopen01g040890 Solanum pennellii HOM05D001789 ORTHO05D001755 1.6e-10 70.1 124 32.3
Aqoxy5G00331 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 3.6e-10 68.9 118 33.9
Rhsim01G0268700 Rhododendron simsii HOM05D001789 ORTHO05D001755 4.7e-10 68.6 112 33.0
SalBow6G6302 Salvia bowleyana HOM05D001789 ORTHO05D001755 4.7e-10 68.6 109 35.8
Sc15g0002530 Simmondsia chinensis HOM05D001789 ORTHO05D001755 4.7e-10 68.6 121 31.4
CSS0005239 Camellia sinensis var. sinensis HOM05D001789 ORTHO05D001755 6.2e-10 68.2 125 34.4
Duzib177G0999 Durio zibethinus HOM05D001789 ORTHO05D001755 1.8e-09 66.6 89 37.1
PSO210G6779 Papaver somniferum HOM05D001789 ORTHO05D001755 1.8e-09 66.6 111 35.1
PSO729G0190 Papaver somniferum HOM05D001789 ORTHO05D001755 1.8e-09 66.6 106 35.8
Migut.D00383 Erythranthe guttata HOM05D001789 ORTHO05D001755 2.4e-09 66.2 112 33.0
Mapoly0035s0011 Marchantia polymorpha HOM05D011467 ORTHO05D014661 2.4e-09 66.2 148 31.1
PSO675G1802 Papaver somniferum HOM05D001789 ORTHO05D001755 2.4e-09 66.2 195 28.2
Zm00001eb308940 Zea mays HOM05D001789 ORTHO05D001755 2.4e-09 66.2 98 38.8
PSO782G1762 Papaver somniferum HOM05D001789 ORTHO05D001755 3.1e-09 65.9 128 32.8
Os09g0124100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 4.0e-09 65.5 89 40.4
PSO675G8957 Papaver somniferum HOM05D001789 ORTHO05D001755 4.0e-09 65.5 125 32.0
PSO017G4575 Papaver somniferum HOM05D001789 ORTHO05D001755 5.2e-09 65.1 139 30.9
AagrBONN_evm.TU.Sc2ySwM_368.3405 Anthoceros agrestis HOM05D001789 ORTHO05D001755 6.8e-09 64.7 124 31.5
PSO017G0677 Papaver somniferum HOM05D001789 ORTHO05D001755 6.8e-09 64.7 146 30.8
PSO017G2802 Papaver somniferum HOM05D001789 ORTHO05D001755 1.2e-08 63.9 106 34.9
PSO478G4273 Papaver somniferum HOM05D001789 ORTHO05D001755 1.2e-08 63.9 141 31.2
A03p33800 Brassica napus HOM05D001789 ORTHO05D001755 1.5e-08 63.5 140 27.9
Mapoly0035s0001 Marchantia polymorpha HOM05D011467 ORTHO05D014661 1.5e-08 63.5 160 30.6
Mapoly0035s0005 Marchantia polymorpha HOM05D011467 ORTHO05D014661 1.5e-08 63.5 160 30.6
Oeu016446.1 Olea europaea HOM05D001789 ORTHO05D000116 1.5e-08 63.5 123 30.1
PSO339G3442 Papaver somniferum HOM05D001789 ORTHO05D001755 2.0e-08 63.2 123 30.9
BcaC01g04353 Brassica carinata HOM05D001789 ORTHO05D001755 2.6e-08 62.8 140 27.9
PSO782G4460 Papaver somniferum HOM05D001789 ORTHO05D001755 2.6e-08 62.8 128 32.0
VMungo1309G1460 Vigna mungo HOM05D001789 ORTHO05D001755 2.6e-08 62.8 73 37.0
PGSC0003DMG400027510 Solanum tuberosum HOM05D001789 ORTHO05D001755 7.6e-08 61.2 75 44.0
Manes.09G151500 Manihot esculenta HOM05D001789 ORTHO05D001755 9.9e-08 60.8 123 30.1
PGSC0003DMG400019459 Solanum tuberosum HOM05D001789 ORTHO05D001755 9.9e-08 60.8 124 32.3
Os02g0494000 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.3e-07 60.5 64 48.4
Psat0s1144g0120 Pisum sativum HOM05D001789 ORTHO05D001755 1.3e-07 60.5 136 26.5
PSO675G7970 Papaver somniferum HOM05D001789 ORTHO05D001755 1.7e-07 60.1 123 30.1
Aqoxy2G03556 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 2.2e-07 59.7 121 29.8
PSO675G1691 Papaver somniferum HOM05D001789 ORTHO05D001755 2.2e-07 59.7 107 32.7
Pp3c26_10740 Physcomitrium patens HOM05D001789 ORTHO05D001755 2.2e-07 59.7 127 28.3
Sed0022842 Sechium edule HOM05D001789 ORTHO05D001755 2.2e-07 59.7 123 26.8
Migut.D00382 Erythranthe guttata HOM05D001789 ORTHO05D001755 3.8e-07 58.9 120 27.5
Migut.D00384 Erythranthe guttata HOM05D001789 ORTHO05D001755 3.8e-07 58.9 89 34.8
Cfa006403 Carpinus fangiana HOM05D001789 ORTHO05D001755 6.4e-07 58.2 105 33.3
C03p41100 Brassica napus HOM05D001789 ORTHO05D001755 8.4e-07 57.8 140 27.1
CARHR078940 Cardamine hirsuta HOM05D001789 ORTHO05D001755 8.4e-07 57.8 136 25.0
Os02g0492900 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 8.4e-07 57.8 134 29.9
CANSAT54G0997 Cannabis sativa HOM05D001789 ORTHO05D001755 1.1e-06 57.4 123 28.5
Ciclev10028402m.g Citrus clementina HOM05D001789 ORTHO05D001755 1.1e-06 57.4 123 27.6
FvH4_6g02680 Fragaria vesca HOM05D001789 ORTHO05D001755 1.1e-06 57.4 123 27.6
PGR119G0058 Punica granatum HOM05D002192 ORTHO05D002173 1.1e-06 57.4 135 31.9
Sp3g03550 Schrenkiella parvula HOM05D001789 ORTHO05D001755 1.1e-06 57.4 123 26.0
THA.LOC104803112 Tarenaya hassleriana HOM05D000264 ORTHO05D000152 1.1e-06 57.4 128 33.6
BraA01t04507Z Brassica rapa HOM05D001789 ORTHO05D001755 1.4e-06 57.0 136 25.0
COL.COLO4_15370 Corchorus olitorius HOM05D001789 ORTHO05D001755 1.4e-06 57.0 123 27.6
Haze_04373 Corylus avellana HOM05D001789 ORTHO05D001755 1.4e-06 57.0 125 29.6
PSO017G2415 Papaver somniferum HOM05D001789 ORTHO05D001755 1.4e-06 57.0 121 29.8
PSO081G0105 Papaver somniferum HOM05D001789 ORTHO05D001755 1.4e-06 57.0 137 27.0
Aqoxy2G03555 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 1.9e-06 56.6 132 32.6
Psat0s14g0080 Pisum sativum HOM05D002015 ORTHO05D001755 1.9e-06 56.6 68 42.6
TPR.G7003 Trifolium pratense HOM05D001789 ORTHO05D001755 1.9e-06 56.6 129 24.8
MSTRG.20457 Avicennia marina HOM05D001789 ORTHO05D001755 2.4e-06 56.2 123 27.6
PSO017G2708 Papaver somniferum HOM05D001789 ORTHO05D001755 2.4e-06 56.2 121 29.8
PSO675G2350 Papaver somniferum HOM05D001789 ORTHO05D001755 2.4e-06 56.2 89 34.8
FAN09G2804 Fragaria x ananassa HOM05D001789 ORTHO05D001755 3.2e-06 55.8 123 26.8
MBI11_g36864_MAGBIO Magnolia biondii HOM05D001789 ORTHO05D001755 3.2e-06 55.8 178 27.0
Duzib128G1133 Durio zibethinus HOM05D001789 ORTHO05D001755 4.2e-06 55.5 123 26.8
FAN02G1989 Fragaria x ananassa HOM05D001789 ORTHO05D001755 4.2e-06 55.5 123 26.8
PSO017G0041 Papaver somniferum HOM05D001789 ORTHO05D001755 4.2e-06 55.5 125 28.8
PSO675G3161 Papaver somniferum HOM05D001789 ORTHO05D001755 4.2e-06 55.5 125 30.4
Cc01_g18750 Coffea canephora HOM05D001789 ORTHO05D001755 7.1e-06 54.7 98 28.6
Thhalv10020698m.g Eutrema salsugineum HOM05D001789 ORTHO05D001755 9.2e-06 54.3 71 36.6
RcHm_v2.0_Chr3g0450651 Rosa chinensis HOM05D001789 ORTHO05D001755 9.2e-06 54.3 140 25.7
SalBow8G2035 Salvia bowleyana HOM05D001789 ORTHO05D001755 9.2e-06 54.3 77 36.4
Solyc01g097190.4 Solanum lycopersicum HOM05D001789 ORTHO05D001755 9.2e-06 54.3 105 32.4
Zm00001eb356200 Zea mays HOM05D001789 ORTHO05D001755 9.2e-06 54.3 137 29.9


User provided reference genes

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