Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 2291.5 1161 100.0
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 2105.9 1160 91.8
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 2070.8 1163 90.3
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1712.2 1176 75.7
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1678.3 1173 73.7
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1671.0 1182 73.3
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1667.5 1173 73.4
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1657.5 1179 73.0
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1656.7 1179 73.0
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1648.3 1178 73.0
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1646.3 1182 72.7
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1640.6 1175 72.5
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1632.8 1175 72.1
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1616.3 1182 71.3
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1615.1 1177 71.3
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1614.7 1182 71.1
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1613.6 1182 70.9
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1613.6 1173 71.1
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1612.0 1174 71.3
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1611.7 1173 71.0
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1610.9 1190 70.4
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1609.7 1174 71.1
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1609.0 1182 71.3
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1609.0 1173 71.6
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1608.2 1175 71.3
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1606.3 1194 70.0
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1604.7 1179 71.7
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1604.3 1181 70.4
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1604.0 1182 71.6
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1602.0 1179 71.5
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1600.9 1185 70.8
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1598.2 1182 70.5
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1596.3 1169 70.9
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1592.4 1179 70.7
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1590.9 1224 68.3
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1589.3 1228 68.1
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1588.9 1228 68.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1588.9 1229 68.2
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1588.2 1184 69.8
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1587.8 1228 68.0
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1576.2 1188 68.7
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1575.5 1171 69.7
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1573.5 1184 69.8
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1572.0 1211 68.3
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1572.0 1181 70.6
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1570.8 1152 71.8
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1570.8 1240 67.8
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1570.1 1211 68.3
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1568.5 1161 70.8
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1568.1 1196 68.7
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1567.7 1181 70.2
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1567.7 1179 69.1
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1567.4 1173 69.7
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1567.0 1176 69.6
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1566.2 1172 69.9
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1566.2 1175 69.8
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1564.3 1175 69.7
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1562.7 1179 69.1
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1562.0 1192 69.2
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1561.6 1176 69.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1561.2 1200 68.7
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1560.4 1173 69.7
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1558.9 1217 68.4
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1558.5 1181 68.5
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1555.0 1240 66.1
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1553.1 1236 66.3
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1552.0 1186 69.0
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1552.0 1171 69.9
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1551.2 1205 67.9
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1549.3 1170 69.5
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1548.5 1180 68.7
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1548.5 1173 68.5
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1548.1 1214 67.9
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1546.6 1169 69.2
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1545.8 1173 69.6
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1545.4 1173 69.6
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1544.6 1171 69.2
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1544.3 1185 68.4
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1543.1 1174 68.6
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1542.3 1177 68.6
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1541.6 1177 68.9
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1536.5 1181 68.2
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1536.5 1181 69.4
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1536.2 1172 68.5
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1534.6 1170 68.5
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1533.1 1171 68.3
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1533.1 1177 68.5
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1532.3 1183 67.9
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1532.3 1203 68.5
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1532.3 1204 67.1
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1531.9 1184 68.1
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1531.5 1185 68.4
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1530.4 1176 68.2
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1530.4 1176 67.9
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1529.2 1175 68.3
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1528.5 1177 68.3
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1528.5 1176 67.5
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1527.7 1191 67.9
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1527.7 1177 67.7
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1527.3 1168 68.7
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1526.9 1177 68.0
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1526.9 1174 68.0
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1524.2 1177 68.5
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1523.1 1183 67.8
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1515.4 1169 68.3
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1514.6 1169 68.8
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1504.6 1173 68.6
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1498.4 1165 68.2
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1496.9 1239 65.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1494.9 1180 67.1
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1486.1 1179 67.2
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1468.0 1095 70.0
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1467.6 1188 66.2
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1457.2 1076 71.1
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1448.3 1163 66.9
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1442.2 1183 65.5
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1439.1 1205 65.0
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1413.7 1116 66.9
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1353.2 1179 62.4
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1334.3 950 72.8
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1305.4 1186 60.3
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1283.1 957 70.6
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1235.3 953 69.4
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1214.9 969 66.5
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1209.1 1042 64.3
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1183.3 1164 56.4
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1166.8 949 65.5
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1125.9 885 67.1
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1107.4 804 71.5
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1090.1 981 62.5
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1078.2 813 69.9
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 6.9e-306 1054.3 972 61.0
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 2.6e-297 1025.8 1169 49.6
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 7.6e-297 1024.2 1158 52.1
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 2.3e-293 1012.7 807 66.2
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 3.3e-284 982.2 799 66.1
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 2.2e-283 979.5 1206 47.1
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 3.5e-265 919.1 723 67.8
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.6e-260 902.9 543 82.1
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 4.5e-257 892.1 715 67.6
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 4.4e-212 742.7 610 66.7
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 7.6e-196 688.7 434 79.3
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 6.7e-152 542.7 363 75.5
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 5.0e-131 473.4 310 76.8
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 4.5e-124 450.3 310 72.9
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.0e-123 449.1 802 36.5
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.7e-123 448.4 310 72.6
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.9e-114 418.3 892 36.0
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 2.9e-110 404.4 1316 28.4
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 6.0e-108 396.7 627 42.3
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.1e-104 386.0 285 69.5
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.3e-86 325.9 503 44.3
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 5.4e-85 320.5 232 69.8
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 7.4e-74 283.5 273 59.0
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 4.8e-73 280.8 201 70.6
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 2.6e-71 275.0 207 65.7
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.9e-66 258.8 184 71.7
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.3e-65 256.1 190 65.8
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.0e-62 246.5 250 56.8
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 2.9e-62 245.0 174 73.0
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 2.5e-61 241.9 142 78.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 2.6e-55 221.9 186 62.9
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 1.8e-51 209.1 132 81.1
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 3.8e-46 191.4 118 83.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.1e-44 185.7 125 73.6
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 2.0e-42 179.1 167 57.5
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 4.7e-36 157.9 92 88.0
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 2.5e-29 135.6 88 70.5
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 2.5e-29 135.6 88 70.5
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 9.4e-29 133.7 88 69.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 7.2e-21 107.5 79 72.2
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 4.4e-18 98.2 83 62.7
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 7.0e-16 90.9 83 60.2
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 2.0e-15 89.4 46 87.0
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 7.2e-13 80.9 100 48.0
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 3.6e-12 78.6 61 65.6
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 8.3e-09 67.4 78 41.0


User provided reference genes

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