Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 4.7e-86 321.2 172 100.0
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 1.8e-32 143.3 168 60.1
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 8.7e-24 114.4 168 48.2
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 3.7e-14 82.4 73 56.2
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 4.8e-14 82.0 82 51.2
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 4.8e-14 82.0 80 56.2
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 6.9e-13 78.2 77 54.5
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 6.9e-13 78.2 77 51.9
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 3.4e-12 75.9 77 51.9
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 4.5e-12 75.5 75 53.3
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 7.7e-12 74.7 78 53.8
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 1.0e-11 74.3 77 48.1
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 1.3e-11 73.9 73 49.3
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 2.2e-11 73.2 77 49.4
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 2.9e-11 72.8 162 35.2
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 3.8e-11 72.4 77 48.1
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 8.5e-11 71.2 77 50.6
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 1.9e-10 70.1 73 47.9
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.2e-10 68.9 80 46.2
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 4.2e-10 68.9 72 51.4
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 7.2e-10 68.2 80 47.5
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-09 67.4 70 51.4
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-09 67.4 70 51.4
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.6e-09 67.0 73 45.2
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.1e-09 66.6 73 45.2
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 2.1e-09 66.6 73 45.2
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 2.1e-09 66.6 73 45.2
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 2.7e-09 66.2 47 70.2
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.7e-09 66.2 77 45.5
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.7e-09 66.2 77 45.5
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 2.7e-09 66.2 72 48.6
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 2.7e-09 66.2 80 48.8
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 2.7e-09 66.2 77 46.8
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.7e-09 65.5 77 45.5
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 4.7e-09 65.5 79 43.0
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 6.1e-09 65.1 76 43.4
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 6.1e-09 65.1 71 42.3
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 6.1e-09 65.1 77 45.5
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 6.1e-09 65.1 75 45.3
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 8.0e-09 64.7 77 42.9
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 8.0e-09 64.7 45 62.2
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 8.0e-09 64.7 73 49.3
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 1.4e-08 63.9 74 45.9
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 1.4e-08 63.9 80 42.5
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 1.4e-08 63.9 75 48.0
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 1.4e-08 63.9 81 44.4
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.8e-08 63.5 81 43.2
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 1.8e-08 63.5 42 66.7
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.8e-08 63.5 77 42.9
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 2.3e-08 63.2 77 42.9
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 2.3e-08 63.2 82 46.3
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.3e-08 63.2 75 52.0
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.0e-08 62.8 69 49.3
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 3.0e-08 62.8 45 60.0
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 3.0e-08 62.8 75 48.0
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 3.0e-08 62.8 73 45.2
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 3.9e-08 62.4 39 66.7
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 3.9e-08 62.4 77 42.9
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 3.9e-08 62.4 72 44.4
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.9e-08 62.4 77 41.6
HPP92_008676 Vanilla planifolia HOM05D003277 ORTHO05D003275 3.9e-08 62.4 69 47.8
HPP92_008689 Vanilla planifolia HOM05D003277 ORTHO05D003275 3.9e-08 62.4 69 47.8
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 5.2e-08 62.0 71 45.1
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 5.2e-08 62.0 72 50.0
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 5.2e-08 62.0 69 47.8
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 6.7e-08 61.6 81 48.1
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 6.7e-08 61.6 72 44.4
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 6.7e-08 61.6 69 47.8
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 6.7e-08 61.6 77 48.1
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 8.8e-08 61.2 73 41.1
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 8.8e-08 61.2 70 41.4
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.1e-07 60.8 79 43.0
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.1e-07 60.8 77 46.8
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 1.1e-07 60.8 77 45.5
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 1.1e-07 60.8 79 45.6
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 1.1e-07 60.8 75 49.3
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 1.5e-07 60.5 75 44.0
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 1.5e-07 60.5 76 42.1
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 1.5e-07 60.5 73 47.9
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.0e-07 60.1 69 43.5
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 2.0e-07 60.1 76 46.1
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 2.0e-07 60.1 79 45.6
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 2.6e-07 59.7 84 36.9
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 2.6e-07 59.7 39 66.7
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.6e-07 59.7 85 41.2
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.6e-07 59.7 85 41.2
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.6e-07 59.7 85 41.2
Medtr4g012460 Medicago truncatula HOM05D003277 ORTHO05D003275 2.6e-07 59.7 77 45.5
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 3.3e-07 59.3 69 44.9
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 3.3e-07 59.3 73 42.5
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.3e-07 59.3 85 42.4
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 3.3e-07 59.3 77 42.9
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 4.4e-07 58.9 73 41.1
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 4.4e-07 58.9 71 42.3
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.4e-07 58.9 85 42.4
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 4.4e-07 58.9 72 47.2
Thhalv10000375m.g Eutrema salsugineum HOM05D012534 ORTHO05D003275 5.7e-07 58.5 79 44.3
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 5.7e-07 58.5 80 41.2
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 5.7e-07 58.5 72 45.8
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 7.4e-07 58.2 71 42.3
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 7.4e-07 58.2 74 43.2
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 7.4e-07 58.2 71 46.5
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 9.7e-07 57.8 72 47.2
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 9.7e-07 57.8 75 48.0
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.3e-06 57.4 75 42.7
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 1.3e-06 57.4 76 40.8
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.3e-06 57.4 83 44.6
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 1.3e-06 57.4 77 37.7
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.7e-06 57.0 79 40.5
CARHR115510 Cardamine hirsuta HOM05D012534 ORTHO05D003275 1.7e-06 57.0 61 50.8
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.7e-06 57.0 85 41.2
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.7e-06 57.0 74 41.9
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.7e-06 57.0 73 41.1
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.7e-06 57.0 74 43.2
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 2.2e-06 56.6 78 41.0
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 2.2e-06 56.6 82 43.9
Medtr4g012390 Medicago truncatula HOM05D003277 ORTHO05D003275 2.2e-06 56.6 72 48.6
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.2e-06 56.6 78 41.0
Sc21g0005130 Simmondsia chinensis HOM05D003277 ORTHO05D003275 2.2e-06 56.6 42 64.3
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 2.2e-06 56.6 74 43.2
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 2.2e-06 56.6 69 43.5
Aa31LG5G9940 Aethionema arabicum HOM05D012534 ORTHO05D003275 2.8e-06 56.2 64 51.6
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 2.8e-06 56.2 68 50.0
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 2.8e-06 56.2 75 40.0
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 2.8e-06 56.2 75 45.3
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 2.8e-06 56.2 76 46.1
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 2.8e-06 56.2 74 41.9
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 2.8e-06 56.2 72 43.1
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 3.7e-06 55.8 45 62.2
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 3.7e-06 55.8 74 39.2
Ca_01117_v3 Cicer arietinum L. HOM05D003111 ORTHO05D003502 3.7e-06 55.8 74 43.2
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.7e-06 55.8 73 43.8
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.7e-06 55.8 74 43.2
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 4.8e-06 55.5 73 43.8
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.8e-06 55.5 73 43.8
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 4.8e-06 55.5 73 43.8
Psat7g251800 Pisum sativum HOM05D003277 ORTHO05D003275 4.8e-06 55.5 78 44.9
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 4.8e-06 55.5 73 45.2
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 4.8e-06 55.5 76 40.8
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 6.3e-06 55.1 71 40.8
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 6.3e-06 55.1 70 44.3
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 8.2e-06 54.7 74 41.9
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 8.2e-06 54.7 68 48.5


User provided reference genes

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