Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.2e-237 827.0 767 100.0
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 2.0e-72 278.1 590 58.1
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 6.1e-69 266.5 771 40.5
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 5.7e-67 260.0 426 53.3
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.1e-30 139.4 485 25.8
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 2.5e-30 138.3 412 29.4
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.3e-30 137.9 424 30.9
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 6.9e-28 130.2 424 29.7
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.2e-27 129.4 405 28.6
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.5e-27 129.0 428 28.3
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 7.6e-27 126.7 411 37.0
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.9e-25 122.1 408 40.7
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 5.1e-23 114.0 414 30.2
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 2.1e-21 108.6 487 28.7
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.7e-21 107.8 348 28.2
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 2.4e-20 105.1 508 30.1
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 4.0e-20 104.4 421 37.3
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 9.0e-20 103.2 394 26.9
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.2e-19 102.8 485 26.0
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 1.5e-19 102.4 409 32.5
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.6e-19 101.7 363 27.8
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.3e-18 99.4 413 24.9
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 1.7e-18 99.0 307 38.1
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 4.9e-18 97.4 389 24.9
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 4.2e-17 94.4 388 28.4
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 9.3e-17 93.2 310 26.8
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 3.5e-16 91.3 392 27.6
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.6e-16 90.9 485 22.9
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 4.6e-16 90.9 497 33.0
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 6.0e-16 90.5 413 24.0
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 7.9e-16 90.1 497 31.4
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.8e-15 89.0 421 29.2
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 2.3e-15 88.6 407 32.7
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 3.0e-15 88.2 294 25.5
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 3.9e-15 87.8 345 25.8
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 6.7e-15 87.0 485 22.7
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 8.7e-15 86.7 361 38.8
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.1e-14 86.3 485 35.9
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.9e-14 85.5 327 23.5
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 2.5e-14 85.1 486 27.6
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 3.3e-14 84.7 398 24.4
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 3.3e-14 84.7 408 32.6
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 5.6e-14 84.0 487 39.6
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 7.4e-14 83.6 485 29.7
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.3e-13 82.8 394 25.1
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.1e-13 82.0 485 22.9
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 3.7e-13 81.3 325 35.7
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 6.2e-13 80.5 346 23.4
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 8.2e-13 80.1 445 22.0
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.8e-12 79.0 436 22.2
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.8e-12 79.0 180 35.6
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 3.1e-12 78.2 414 26.6
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 4.0e-12 77.8 411 23.8
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 4.0e-12 77.8 418 24.2
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.2e-11 76.3 409 24.4
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 2.6e-11 75.1 411 34.5
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 5.8e-11 73.9 176 31.8
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 5.8e-11 73.9 408 22.8
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 7.6e-11 73.6 386 23.1
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 1.3e-10 72.8 335 26.9
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 3.8e-10 71.2 135 34.8
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.9e-10 70.9 105 38.1
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 6.5e-10 70.5 306 23.9
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 8.4e-10 70.1 179 31.3
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 8.4e-10 70.1 423 34.3
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 1.4e-09 69.3 418 22.7
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.4e-09 69.3 396 22.7
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.9e-09 68.9 408 33.6
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 1.9e-09 68.9 403 24.6
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.5e-09 68.6 506 30.0
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 3.2e-09 68.2 377 29.4
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 5.5e-09 67.4 490 20.8
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.2e-08 66.2 488 37.9
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.2e-08 66.2 431 21.6
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.2e-08 66.2 421 34.0
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.6e-08 65.9 125 35.2
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.6e-08 65.9 180 31.1
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.6e-08 65.9 330 31.5
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 2.7e-08 65.1 419 21.5
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.7e-08 65.1 172 32.6
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 2.7e-08 65.1 223 26.0
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 3.5e-08 64.7 334 37.1
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 3.5e-08 64.7 86 41.9
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 6.0e-08 63.9 392 26.3
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 6.0e-08 63.9 484 27.5
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 6.0e-08 63.9 487 26.3
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 6.0e-08 63.9 392 31.6
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 7.9e-08 63.5 413 21.5
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 1.0e-07 63.2 173 31.2
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 1.0e-07 63.2 173 29.5
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.0e-07 63.2 389 25.4
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.0e-07 63.2 414 24.6
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.3e-07 62.8 392 21.7
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.3e-07 62.8 392 21.7
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.3e-07 62.8 392 21.7
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.3e-07 62.8 409 23.0
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 1.8e-07 62.4 132 33.3
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.3e-07 62.0 97 37.1
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 3.0e-07 61.6 501 28.9
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 5.1e-07 60.8 370 23.5
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.1e-07 60.8 428 31.3
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 5.1e-07 60.8 387 37.0
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 6.7e-07 60.5 173 30.6
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 6.7e-07 60.5 408 26.0
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 6.7e-07 60.5 154 31.2
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 8.7e-07 60.1 120 35.0
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 1.9e-06 58.9 320 20.6
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.5e-06 58.5 333 28.8
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 3.3e-06 58.2 97 39.2
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 5.7e-06 57.4 325 23.4
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 7.4e-06 57.0 380 27.6
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 9.7e-06 56.6 389 27.5
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 9.7e-06 56.6 485 30.7


User provided reference genes

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