Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 0.0e+00 1505.0 833 100.0
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 0.0e+00 1107.4 838 72.3
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.1e-180 637.9 848 46.8
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 2.5e-172 610.1 833 46.6
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 4.2e-172 609.4 847 45.7
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.5e-172 609.0 862 45.1
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.1e-171 607.1 857 44.1
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 2.7e-171 606.7 854 44.1
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 7.9e-171 605.1 839 45.6
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.3e-169 599.7 834 44.6
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 5.7e-169 599.0 854 44.0
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 2.2e-168 597.0 863 44.0
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.1e-167 594.7 850 44.2
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.4e-167 594.3 842 44.5
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.4e-167 593.6 856 44.0
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 9.1e-167 591.7 860 43.7
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 2.0e-166 590.5 849 44.3
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.7e-166 588.6 852 44.1
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.0e-165 588.2 852 43.8
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.7e-165 587.4 830 48.8
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 2.9e-165 586.6 841 44.4
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.8e-165 586.3 817 44.8
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 5.0e-165 585.9 528 59.8
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 6.5e-165 585.5 830 48.7
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.5e-164 583.6 850 43.1
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.2e-163 581.3 883 43.5
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.2e-163 581.3 849 43.1
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 3.6e-163 579.7 883 43.5
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 3.6e-163 579.7 854 43.2
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 4.7e-163 579.3 834 43.0
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 6.1e-163 578.9 837 43.7
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 2.3e-162 577.0 818 44.0
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.1e-161 574.7 856 43.5
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 1.1e-161 574.7 911 41.6
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.0e-161 573.9 848 44.1
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 5.7e-161 572.4 916 41.6
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 7.4e-161 572.0 881 42.7
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.3e-160 571.2 845 43.1
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 2.2e-160 570.5 829 42.7
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 3.7e-160 569.7 845 42.4
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.1e-159 568.2 833 43.2
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.4e-159 567.8 874 41.2
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 4.1e-159 566.2 564 54.8
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 5.9e-158 562.4 842 42.4
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.3e-157 561.2 806 43.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.3e-157 561.2 906 42.3
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 6.5e-157 558.9 852 42.1
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 8.5e-157 558.5 861 42.7
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.9e-156 557.4 508 58.5
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 5.5e-156 555.8 880 41.1
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 4.7e-155 552.7 507 58.0
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 3.0e-154 550.1 508 58.3
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 3.9e-154 549.7 851 42.0
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 6.7e-154 548.9 860 40.9
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 5.7e-153 545.8 866 43.6
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.7e-152 544.3 845 41.8
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.8e-152 543.5 961 39.3
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 2.8e-152 543.5 831 41.2
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.1e-151 541.6 805 43.0
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.4e-151 541.2 847 42.0
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 1.8e-151 540.8 866 41.2
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 3.1e-151 540.0 849 41.3
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 3.1e-151 540.0 878 39.5
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 7.0e-151 538.9 561 53.3
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 2.0e-150 537.3 581 51.3
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.6e-150 537.0 856 40.9
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.1e-148 531.6 826 44.4
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 4.2e-148 529.6 859 40.6
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 5.5e-148 529.3 508 55.9
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 7.2e-148 528.9 539 55.1
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 7.2e-148 528.9 866 40.6
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 9.4e-148 528.5 515 55.1
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 2.7e-147 526.9 876 40.6
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 6.7e-146 522.3 517 55.1
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 6.7e-146 522.3 863 40.1
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 8.8e-146 521.9 933 39.9
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.5e-145 521.2 852 40.7
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 3.3e-145 520.0 834 40.8
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 4.4e-145 519.6 832 40.9
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 2.2e-144 517.3 838 40.2
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 5.3e-143 512.7 876 38.9
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 7.0e-143 512.3 865 39.5
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.3e-141 508.1 835 40.2
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 5.5e-140 502.7 838 39.7
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.2e-139 501.5 871 40.9
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 5.2e-138 496.1 835 40.4
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.5e-137 494.6 861 38.2
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.6e-137 493.8 458 58.3
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 3.4e-137 493.4 841 39.1
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 4.4e-137 493.0 837 38.1
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.7e-136 491.1 862 37.4
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 2.8e-136 490.3 753 42.2
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 4.8e-136 489.6 832 38.5
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-135 488.4 841 38.8
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 1.1e-135 488.4 856 39.1
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 4.1e-135 486.5 863 39.0
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 7.0e-135 485.7 838 38.7
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 2.0e-134 484.2 841 39.0
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 2.0e-134 484.2 829 39.8
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.7e-134 483.8 796 41.1
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 3.5e-134 483.4 511 52.8
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 4.5e-134 483.0 511 52.6
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.7e-133 481.1 450 55.6
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 1.9e-132 477.6 564 48.2
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 4.7e-131 473.0 836 38.8
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 4.7e-131 473.0 856 38.7
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 5.2e-130 469.5 564 48.0
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.2e-129 468.4 562 49.3
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.5e-129 468.0 826 39.5
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.5e-129 468.0 565 47.8
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 3.4e-129 466.8 517 50.9
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 4.9e-128 463.0 475 53.5
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.4e-127 461.5 841 42.0
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 7.0e-127 459.1 832 38.9
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.4e-119 434.9 499 48.5
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 3.0e-117 427.2 567 45.9
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.6e-115 420.2 472 48.1
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 3.4e-113 413.7 826 37.0
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 4.6e-110 403.3 491 48.7
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.0e-109 400.6 478 45.6
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 5.1e-101 373.2 556 41.9
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.1e-98 365.5 573 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 6.4e-96 356.3 479 44.3
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.3e-93 348.6 865 31.6
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-91 341.7 481 43.0
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.7e-91 340.1 482 42.3
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.3e-88 332.0 482 41.7
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.8e-83 314.3 482 39.2
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.8e-83 314.3 482 39.2
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.8e-83 313.5 440 40.0
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.4e-81 307.4 471 40.3
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-79 302.0 475 39.6
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.2e-78 298.9 495 39.4
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.5e-65 253.8 326 47.2
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.5e-57 228.8 549 36.1
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 3.4e-57 227.6 194 53.6
Zm00001eb062290 Zea mays HOM05D033545 ORTHO05D005595 5.1e-53 213.8 214 56.1
Zm00001eb001580 Zea mays HOM05D033545 ORTHO05D005595 6.7e-53 213.4 214 57.0
Zm00001eb313210 Zea mays HOM05D033545 ORTHO05D005595 3.9e-45 187.6 192 55.2
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 5.7e-44 183.7 414 35.0
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 4.8e-35 154.1 369 35.5
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.5e-33 147.9 214 43.9
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.3e-19 100.1 207 36.2
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 2.0e-17 95.5 89 47.2
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 2.3e-16 92.0 70 64.3
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 3.5e-09 68.2 107 38.3
Zm00001eb309970 Zea mays HOM05D004705 ORTHO05D442594 3.9e-08 64.7 30 93.3


User provided reference genes

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