Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 0.0e+00 1188.7 598 100.0
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 9.1e-286 986.5 602 82.7
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 1.9e-187 659.8 598 58.0
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 1.0e-183 647.5 613 56.9
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 5.5e-182 641.7 603 57.0
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 7.9e-181 637.9 602 55.1
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 8.7e-180 634.4 603 53.6
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 2.2e-178 629.8 612 55.4
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 3.7e-178 629.0 604 53.5
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 8.2e-178 627.9 608 54.9
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.1e-177 627.5 604 53.3
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 6.9e-177 624.8 608 54.8
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 9.0e-177 624.4 598 55.0
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.5e-176 623.6 601 55.2
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.5e-176 623.6 612 53.8
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 5.9e-176 621.7 607 54.4
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 3.8e-175 619.0 604 53.8
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 5.0e-175 618.6 602 53.3
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 6.5e-175 618.2 600 54.7
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 3.2e-174 615.9 608 53.8
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 7.2e-174 614.8 608 53.6
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 7.2e-174 614.8 601 54.6
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 9.4e-174 614.4 607 52.9
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 9.4e-174 614.4 604 54.5
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 1.2e-173 614.0 602 53.0
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 2.1e-173 613.2 605 53.1
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 4.6e-173 612.1 612 52.5
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.8e-172 610.1 606 53.6
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 3.9e-172 609.0 599 52.8
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 5.7e-171 605.1 600 53.2
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 7.4e-171 604.7 603 54.6
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 7.4e-171 604.7 607 53.4
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 9.7e-171 604.4 601 53.9
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 2.2e-170 603.2 611 53.5
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 2.2e-170 603.2 677 49.0
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 3.7e-170 602.4 602 53.8
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 6.3e-170 601.7 607 52.4
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 6.3e-170 601.7 607 53.5
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 8.2e-170 601.3 601 52.9
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 8.2e-170 601.3 602 53.8
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 6.9e-169 598.2 601 53.1
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 6.9e-169 598.2 602 54.2
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 6.9e-169 598.2 626 50.6
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 1.2e-168 597.4 605 52.4
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 2.0e-168 596.7 605 52.6
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 1.3e-167 594.0 607 52.2
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 2.2e-167 593.2 601 53.4
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 8.5e-167 591.3 674 48.8
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 1.1e-166 590.9 601 53.1
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.1e-166 590.9 602 52.3
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.4e-166 590.5 638 52.0
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 1.9e-166 590.1 607 52.2
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 2.5e-166 589.7 632 51.4
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 9.4e-166 587.8 605 52.2
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.6e-165 587.0 602 52.5
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 2.1e-165 586.6 600 54.8
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 2.1e-165 586.6 603 52.1
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 4.7e-165 585.5 599 52.6
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 6.1e-165 585.1 614 51.0
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.0e-164 584.3 602 51.8
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 2.3e-164 583.2 603 50.2
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.3e-164 583.2 603 51.7
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 1.5e-163 580.5 605 51.2
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 2.0e-163 580.1 601 51.7
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 4.4e-163 578.9 605 52.7
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 7.4e-163 578.2 603 52.1
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.7e-162 577.0 599 51.8
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 2.8e-162 576.2 599 50.8
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 6.3e-162 575.1 638 50.3
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.8e-161 573.5 603 50.7
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 3.1e-161 572.8 602 51.2
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 4.1e-161 572.4 602 53.2
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 4.1e-161 572.4 600 51.3
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 1.6e-160 570.5 605 51.6
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 5.9e-160 568.5 539 56.8
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 7.7e-160 568.2 601 50.7
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.0e-159 567.8 603 52.2
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.3e-159 567.4 603 51.9
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 1.3e-159 567.4 611 50.6
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 1.3e-159 567.4 606 50.3
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.7e-159 567.0 612 50.2
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 2.9e-159 566.2 607 50.9
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.1e-158 564.3 603 51.7
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 1.9e-158 563.5 610 48.5
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 7.2e-158 561.6 601 51.2
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 9.4e-158 561.2 606 50.5
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.2e-157 560.8 601 50.7
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 1.6e-157 560.5 607 51.4
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 3.6e-157 559.3 613 51.4
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 4.7e-157 558.9 603 51.4
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 6.1e-157 558.5 602 51.0
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 6.1e-157 558.5 602 51.0
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 5.2e-156 555.4 603 51.1
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.5e-155 553.9 565 54.0
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 3.6e-149 532.7 607 47.8
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 4.7e-149 532.3 567 50.4
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 6.1e-149 531.9 605 48.9
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 6.8e-148 528.5 605 49.6
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 8.5e-143 511.5 567 49.4
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 2.1e-141 506.9 599 46.4
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.6e-136 490.7 583 47.5
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 3.5e-136 489.6 511 53.2
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 2.9e-135 486.5 608 44.6
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 8.9e-132 474.9 547 50.3
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 8.9e-132 474.9 547 49.4
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.8e-129 467.2 419 58.9
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 3.5e-128 463.0 625 41.3
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 2.7e-120 436.8 443 51.5
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 1.7e-119 434.1 462 50.9
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 5.0e-119 432.6 556 48.0
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 2.5e-118 430.3 615 40.8
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-118 430.3 530 45.1
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.5e-110 403.7 604 39.6
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.2e-107 394.8 579 39.2
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 7.3e-102 375.6 612 37.4
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 6.9e-100 369.0 603 38.1
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.0e-95 355.1 368 48.9
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 3.3e-94 350.1 280 63.2
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 8.4e-82 308.9 630 34.3
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 1.1e-78 298.5 317 50.8
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 3.2e-73 280.4 316 48.1
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 4.2e-73 280.0 246 56.1
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.8e-71 274.6 242 56.6
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 2.7e-64 250.8 472 39.4
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.8e-55 221.5 624 29.5
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 3.1e-52 210.7 247 46.2
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.3e-50 205.3 427 34.2
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 6.7e-47 193.0 288 40.6
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 7.0e-44 183.0 166 57.8
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.3e-42 178.7 283 38.9
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 6.5e-42 176.4 564 29.6
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 9.4e-41 172.6 134 59.7
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 3.6e-32 144.1 293 33.8
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 8.0e-32 142.9 133 51.1
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 1.5e-30 138.7 134 53.7
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 4.4e-30 137.1 128 55.5
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 7.0e-28 129.8 391 30.2
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 1.0e-23 115.9 116 52.6
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.3e-21 109.0 139 41.0
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 7.0e-20 103.2 80 56.2
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 7.8e-19 99.8 97 51.5
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 7.3e-17 93.2 84 56.0
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 8.0e-16 89.7 723 20.9
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 2.2e-13 81.6 72 54.2
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 6.6e-10 70.1 40 72.5
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 6.6e-10 70.1 40 72.5
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.5e-09 68.9 51 66.7
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 3.3e-09 67.8 39 71.8
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 7.3e-09 66.6 39 71.8
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.6e-08 64.3 91 40.7
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 2.3e-07 61.6 135 34.1
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 2.3e-07 61.6 135 34.1
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 6.8e-07 60.1 53 56.6
Zm00001eb054590 Zea mays HOM05D004766 ORTHO05D006159 6.8e-07 60.1 58 58.6


User provided reference genes

Program Settings