Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0149900 Oryza sativa ssp. japonica HOM05D002515 ORTHO05D002722 0.0e+00 1338.9 743 100.0
Zm00001eb335890 Zea mays HOM05D002515 ORTHO05D002722 3.7e-188 662.5 754 54.4
Zm00001eb124370 Zea mays HOM05D002515 ORTHO05D002722 6.4e-172 608.6 770 52.1
MBI14_g20110_MAGBIO Magnolia biondii HOM05D002515 ORTHO05D002722 2.9e-31 141.4 651 26.1
Dinv35605 Davidia involucrata HOM05D002515 ORTHO05D002722 1.5e-24 119.0 589 23.9
CSS0028630 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.9e-22 112.1 579 24.9
Aqoxy4G02918 Aquilegia oxysepala HOM05D002515 ORTHO05D002722 4.2e-22 110.9 580 24.3
TWI74G1566 Tripterygium wilfordii HOM05D002515 ORTHO05D002722 1.0e-20 106.3 266 32.0
TAR633G1102 Trochodendron aralioides HOM05D002515 ORTHO05D002722 3.0e-20 104.8 642 25.2
MD11G1109700 Malus domestica HOM05D002515 ORTHO05D002722 1.5e-19 102.4 318 28.0
Nn2g10370 Nelumbo nucifera HOM05D002515 ORTHO05D002722 2.1e-18 98.6 712 23.9
Nitab4.5_0000216g0300 Nicotiana tabacum HOM05D002515 ORTHO05D002722 3.7e-18 97.8 244 31.6
GSVIVG01034175001 Vitis vinifera HOM05D002515 ORTHO05D002722 3.7e-18 97.8 256 32.8
vmacro08655 Vaccinium macrocarpon HOM05D002515 ORTHO05D002722 4.8e-18 97.4 593 25.0
Potri.009G030700 Populus trichocarpa HOM05D002515 ORTHO05D002722 6.2e-18 97.1 266 27.1
Sabra09G0021700 Salix brachista HOM05D002515 ORTHO05D002722 1.1e-17 96.3 266 28.2
Prupe.6G078200 Prunus persica HOM05D002515 ORTHO05D002722 1.8e-17 95.5 262 28.6
GSVIVG01024972001 Vitis vinifera HOM05D002515 ORTHO05D002722 1.8e-17 95.5 266 27.4
HPP92_019190 Vanilla planifolia HOM05D002515 ORTHO05D002722 3.1e-17 94.7 584 22.9
Solyc10g084750.1 Solanum lycopersicum HOM05D002515 ORTHO05D002722 9.0e-17 93.2 559 25.4
RcHm_v2.0_Chr3g0466591 Rosa chinensis HOM05D002515 ORTHO05D002722 1.2e-16 92.8 207 31.4
Os12g0570500 Oryza sativa ssp. japonica HOM05D002515 ORTHO05D002722 1.5e-16 92.4 174 35.1
Sopen10g034200 Solanum pennellii HOM05D002515 ORTHO05D002722 1.5e-16 92.4 559 25.2
Actinidia13143 Actinidia chinensis HOM05D002515 ORTHO05D002722 2.0e-16 92.0 261 28.4
QL01p032098 Quercus lobata HOM05D002515 ORTHO05D002722 2.6e-16 91.7 273 27.8
Rhsim04G0156800 Rhododendron simsii HOM05D002515 ORTHO05D002722 2.6e-16 91.7 584 24.1
Rhsim04G0157000 Rhododendron simsii HOM05D002515 ORTHO05D002722 2.6e-16 91.7 584 24.1
Zm00001eb029260 Zea mays HOM05D002515 ORTHO05D002722 5.8e-16 90.5 184 33.2
Actinidia05311 Actinidia chinensis HOM05D002515 ORTHO05D002722 7.6e-16 90.1 266 28.2
Nitab4.5_0000202g0110 Nicotiana tabacum HOM05D002515 ORTHO05D002722 7.6e-16 90.1 252 29.8
Prupe.6G254700 Prunus persica HOM05D002515 ORTHO05D002722 1.0e-15 89.7 190 31.1
CANSAT35G0014 Cannabis sativa HOM05D002515 ORTHO05D002722 2.9e-15 88.2 207 29.0
CDE04G3739 Ceratophyllum demersum HOM05D002515 ORTHO05D002722 4.9e-15 87.4 549 23.1
Peaxi162Scf00094g00141 Petunia axillaris HOM05D002515 ORTHO05D002722 4.9e-15 87.4 555 24.3
Cc06_g02660 Coffea canephora HOM05D002515 ORTHO05D002722 6.5e-15 87.0 584 22.9
PSO339G4477 Papaver somniferum HOM05D002515 ORTHO05D002722 8.4e-15 86.7 668 23.5
PGSC0003DMG400011004 Solanum tuberosum HOM05D002515 ORTHO05D002722 8.4e-15 86.7 562 25.3
Duzib093G1384 Durio zibethinus HOM05D002515 ORTHO05D002722 1.1e-14 86.3 265 27.9
Manes.09G091300 Manihot esculenta HOM05D002515 ORTHO05D002722 1.1e-14 86.3 264 28.8
Potri.016G095500 Populus trichocarpa HOM05D002515 ORTHO05D002722 1.1e-14 86.3 207 32.4
Nitab4.5_0002018g0030 Nicotiana tabacum HOM05D002515 ORTHO05D002722 1.9e-14 85.5 227 32.2
TAR636G1669 Trochodendron aralioides HOM05D002515 ORTHO05D002722 1.9e-14 85.5 212 30.7
HPP92_006613 Vanilla planifolia HOM05D005124 ORTHO05D005914 1.9e-14 85.5 552 23.2
Manes.11G128400 Manihot esculenta HOM05D002515 ORTHO05D002722 2.5e-14 85.1 270 27.4
RcHm_v2.0_Chr5g0064421 Rosa chinensis HOM05D002515 ORTHO05D002722 2.5e-14 85.1 210 31.4
MD12G1141400 Malus domestica HOM05D002515 ORTHO05D002722 3.2e-14 84.7 222 27.9
Nitab4.5_0006455g0020 Nicotiana tabacum HOM05D002515 ORTHO05D002722 4.2e-14 84.3 204 33.3
HPP92_019199 Vanilla planifolia HOM05D002515 ORTHO05D002722 4.2e-14 84.3 584 22.1
Atru.chr3.3898 Acer truncatum HOM05D002515 ORTHO05D002722 9.3e-14 83.2 270 25.2
PGSC0003DMG400008910 Solanum tuberosum HOM05D002515 ORTHO05D002722 1.6e-13 82.4 550 23.3
Cfa017383 Carpinus fangiana HOM05D002515 ORTHO05D002722 2.7e-13 81.6 679 21.6
Haze_24092 Corylus avellana HOM05D002515 ORTHO05D002722 2.7e-13 81.6 297 26.3
SalBow4G1848 Salvia bowleyana HOM05D002515 ORTHO05D002722 2.7e-13 81.6 181 30.9
THA.LOC104816274 Tarenaya hassleriana HOM05D002515 ORTHO05D002722 2.7e-13 81.6 260 28.1
Atru.chr8.1972 Acer truncatum HOM05D002515 ORTHO05D002722 3.5e-13 81.3 176 31.2
FvH4_6g13720 Fragaria vesca HOM05D002515 ORTHO05D002722 3.5e-13 81.3 264 27.7
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 6.0e-13 80.5 269 26.0
A10p33270 Brassica napus HOM05D002515 ORTHO05D002722 7.9e-13 80.1 276 26.4
MD04G1128800 Malus domestica HOM05D002515 ORTHO05D002722 1.0e-12 79.7 183 29.5
BraA10t45358Z Brassica rapa HOM05D002515 ORTHO05D002722 1.3e-12 79.3 276 26.8
Sopen09g005510 Solanum pennellii HOM05D002515 ORTHO05D002722 1.3e-12 79.3 203 29.1
vmacro03074 Vaccinium macrocarpon HOM05D002515 ORTHO05D002722 1.3e-12 79.3 266 28.6
CARHR211020 Cardamine hirsuta HOM05D002515 ORTHO05D002722 1.8e-12 79.0 266 27.4
FAN11G3380 Fragaria x ananassa HOM05D002515 ORTHO05D002722 1.8e-12 79.0 263 28.1
Oeu052948.3 Olea europaea HOM05D002082 ORTHO05D002130 2.3e-12 78.6 271 24.7
PGR004G0883 Punica granatum HOM05D002515 ORTHO05D002722 2.3e-12 78.6 294 26.9
VMungo0720G0231 Vigna mungo HOM05D002515 ORTHO05D002722 2.3e-12 78.6 184 30.4
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 3.0e-12 78.2 280 26.4
C09p74180 Brassica napus HOM05D002515 ORTHO05D002722 3.0e-12 78.2 280 26.4
BolC9t60151H Brassica oleracea HOM05D002515 ORTHO05D002722 3.0e-12 78.2 280 26.4
Potri.001G239500 Populus trichocarpa HOM05D002515 ORTHO05D002722 3.0e-12 78.2 264 24.2
Solyc09g010790.2 Solanum lycopersicum HOM05D002515 ORTHO05D002722 3.0e-12 78.2 237 27.8
ATR0559G060 Amborella trichopoda HOM05D002515 ORTHO05D002722 3.9e-12 77.8 250 28.0
Peaxi162Scf00165g01219 Petunia axillaris HOM05D002515 ORTHO05D002722 3.9e-12 77.8 251 31.5
Sp6g40090 Schrenkiella parvula HOM05D002515 ORTHO05D002722 3.9e-12 77.8 277 25.6
AL6G11620 Arabidopsis lyrata HOM05D002515 ORTHO05D002722 6.7e-12 77.0 142 32.4
CDE07G1359 Ceratophyllum demersum HOM05D002515 ORTHO05D002722 6.7e-12 77.0 229 28.4
Haze_20788 Corylus avellana HOM05D002515 ORTHO05D002722 6.7e-12 77.0 681 21.7
FvH4_3g36010 Fragaria vesca HOM05D002515 ORTHO05D002722 6.7e-12 77.0 263 27.8
arahy.Tifrunner.gnm1.ann1.6LJ86G Arachis hypogaea HOM05D002515 ORTHO05D002722 8.7e-12 76.6 176 29.5
Carub.0006s0118 Capsella rubella HOM05D002515 ORTHO05D002722 1.5e-11 75.9 272 26.8
Lalb_Chr01g0011081 Lupinus albus HOM05D002515 ORTHO05D002722 1.5e-11 75.9 192 31.2
arahy.Tifrunner.gnm1.ann1.T3EUR0 Arachis hypogaea HOM05D002515 ORTHO05D002722 1.9e-11 75.5 176 29.5
DCAR_009231 Daucus carota HOM05D002515 ORTHO05D002722 1.9e-11 75.5 329 25.2
Duzib128G0266 Durio zibethinus HOM05D002515 ORTHO05D002722 1.9e-11 75.5 102 41.2
Duzib168G0968 Durio zibethinus HOM05D002515 ORTHO05D002722 2.5e-11 75.1 183 28.4
Lsat_1_v5_gn_9_23360 Lactuca sativa HOM05D002515 ORTHO05D002722 2.5e-11 75.1 211 28.0
HanXRQChr15g0470071 Helianthus annuus HOM05D002515 ORTHO05D002722 3.3e-11 74.7 172 31.4
Oeu053748.1 Olea europaea HOM05D002082 ORTHO05D002130 3.3e-11 74.7 252 23.8
A03p00660 Brassica napus HOM05D002515 ORTHO05D002722 4.3e-11 74.3 180 27.8
FAN16G3741 Fragaria x ananassa HOM05D002515 ORTHO05D002722 4.3e-11 74.3 271 26.9
HanXRQChr04g0105731 Helianthus annuus HOM05D002515 ORTHO05D002722 4.3e-11 74.3 263 28.5
Lalb_Chr03g0036731 Lupinus albus HOM05D002515 ORTHO05D002722 4.3e-11 74.3 178 30.3
Sabra16G0144400 Salix brachista HOM05D002515 ORTHO05D002722 5.7e-11 73.9 265 24.9
Actinidia10009 Actinidia chinensis HOM05D002082 ORTHO05D002130 7.4e-11 73.6 257 25.7
Migut.L01943 Erythranthe guttata HOM05D002515 ORTHO05D002722 7.4e-11 73.6 282 27.3
TPR.G31257 Trifolium pratense HOM05D002515 ORTHO05D002722 7.4e-11 73.6 179 29.6
Ciclev10027797m.g Citrus clementina HOM05D002515 ORTHO05D002722 9.7e-11 73.2 271 26.2
Sabra16G0101300 Salix brachista HOM05D002515 ORTHO05D002722 9.7e-11 73.2 263 26.6
Aa31LG1G22410 Aethionema arabicum HOM05D002515 ORTHO05D002722 1.3e-10 72.8 299 25.1
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 1.3e-10 72.8 174 29.3
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 1.3e-10 72.8 174 29.3
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 1.3e-10 72.8 174 29.3
FAN25G0844 Fragaria x ananassa HOM05D002515 ORTHO05D002722 1.3e-10 72.8 270 27.0
ClCG02G020160 Citrullus lanatus HOM05D002515 ORTHO05D002722 1.6e-10 72.4 133 30.1
FAN09G4793 Fragaria x ananassa HOM05D002515 ORTHO05D002722 1.6e-10 72.4 572 26.4
Ca_20526_v3 Cicer arietinum L. HOM05D002515 ORTHO05D002722 2.2e-10 72.0 176 29.5
Ca_30765_v3 Cicer arietinum L. HOM05D002515 ORTHO05D002722 2.2e-10 72.0 176 29.5
Glyma.15G038400 Glycine max HOM05D002515 ORTHO05D002722 2.2e-10 72.0 278 27.0
MBI18_g06450_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 2.2e-10 72.0 265 24.2
Ciclev10013810m.g Citrus clementina HOM05D002515 ORTHO05D002722 2.8e-10 71.6 274 25.5
Thhalv10012673m.g Eutrema salsugineum HOM05D002515 ORTHO05D002722 2.8e-10 71.6 317 24.0
Lj3g0026583 Lotus japonicus HOM05D002515 ORTHO05D002722 2.8e-10 71.6 198 27.3
AT5G02390 Arabidopsis thaliana HOM05D002515 ORTHO05D002722 3.7e-10 71.2 279 26.2
Lsat_1_v5_gn_8_109380 Lactuca sativa HOM05D002515 ORTHO05D002722 3.7e-10 71.2 169 30.8
Thecc.09G322100 Theobroma cacao HOM05D002515 ORTHO05D002722 3.7e-10 71.2 234 26.1
BcaC06g31985 Brassica carinata HOM05D002515 ORTHO05D002722 4.8e-10 70.9 257 24.9
CSS0030774 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 4.8e-10 70.9 223 30.0
QL07p048238 Quercus lobata HOM05D002515 ORTHO05D002722 4.8e-10 70.9 571 21.5
TWI79G0006 Tripterygium wilfordii HOM05D002515 ORTHO05D002722 4.8e-10 70.9 169 29.6
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 8.2e-10 70.1 174 31.6
Gohir.D11G345600 Gossypium hirsutum HOM05D002515 ORTHO05D002722 8.2e-10 70.1 171 28.1
Gorai.007G375900 Gossypium raimondii HOM05D002515 ORTHO05D002722 8.2e-10 70.1 171 28.1
Medtr4g021865 Medicago truncatula HOM05D002515 ORTHO05D002722 8.2e-10 70.1 225 29.3
EL10Ac5g11575 Beta vulgaris HOM05D002515 ORTHO05D002722 1.1e-09 69.7 160 29.4
CSS0020060 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.1e-09 69.7 223 30.0
FAN05G1797 Fragaria x ananassa HOM05D002515 ORTHO05D002722 1.1e-09 69.7 629 27.7
Lalb_Chr07g0193901 Lupinus albus HOM05D002515 ORTHO05D002722 1.1e-09 69.7 179 29.1
COL.COLO4_14800 Corchorus olitorius HOM05D002515 ORTHO05D002722 1.4e-09 69.3 246 24.8
Thecc.05G040000 Theobroma cacao HOM05D002515 ORTHO05D002722 1.4e-09 69.3 170 28.8
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 1.8e-09 68.9 183 25.7
Gohir.A11G326700 Gossypium hirsutum HOM05D002515 ORTHO05D002722 1.8e-09 68.9 171 26.9
ECA247G2589 Erigeron canadensis HOM05D002515 ORTHO05D002722 2.4e-09 68.6 184 26.6
Eucgr.J02056 Eucalyptus grandis HOM05D002515 ORTHO05D002722 2.4e-09 68.6 219 26.0
Duzib150G0343 Durio zibethinus HOM05D002515 ORTHO05D002722 3.1e-09 68.2 203 28.6
Lj2A95G42 Lonicera japonica HOM05D002515 ORTHO05D002722 3.1e-09 68.2 613 21.4
Gorai.009G099300 Gossypium raimondii HOM05D002515 ORTHO05D002722 4.1e-09 67.8 154 32.5
TAR375G0315 Trochodendron aralioides HOM05D002082 ORTHO05D002130 4.1e-09 67.8 266 25.2
arahy.Tifrunner.gnm1.ann1.D53E9A Arachis hypogaea HOM05D002515 ORTHO05D002722 5.3e-09 67.4 203 26.1
Cfa011498 Carpinus fangiana HOM05D002515 ORTHO05D006653 5.3e-09 67.4 85 35.3
Lj6g0009284 Lotus japonicus HOM05D002515 ORTHO05D002722 6.9e-09 67.0 176 27.3
arahy.Tifrunner.gnm1.ann1.WWI603 Arachis hypogaea HOM05D002515 ORTHO05D002722 9.0e-09 66.6 205 26.8
Gohir.D05G096000 Gossypium hirsutum HOM05D002515 ORTHO05D002722 9.0e-09 66.6 154 31.8
SGA_v2.0_scaffold35G14232 Striga asiatica HOM05D002515 ORTHO05D002722 9.0e-09 66.6 180 28.9
Nitab4.5_0003753g0020 Nicotiana tabacum HOM05D002515 ORTHO05D002722 1.2e-08 66.2 293 25.9
FAN02G3265 Fragaria x ananassa HOM05D002515 ORTHO05D002722 1.5e-08 65.9 684 21.5
Psat6g048200 Pisum sativum HOM05D002515 ORTHO05D002722 1.5e-08 65.9 184 28.8
Actinidia20902 Actinidia chinensis HOM05D002082 ORTHO05D002130 2.0e-08 65.5 253 24.1
Phvul.L005343 Phaseolus vulgaris HOM05D002515 ORTHO05D002722 2.0e-08 65.5 108 33.3
Medtr2g096870 Medicago truncatula HOM05D002515 ORTHO05D002722 2.6e-08 65.1 259 24.3
AUR62041766 Chenopodium quinoa HOM05D002515 ORTHO05D002722 3.4e-08 64.7 162 26.5
Migut.N00705 Erythranthe guttata HOM05D002515 ORTHO05D002722 3.4e-08 64.7 163 31.3
MD07G1136900 Malus domestica HOM05D002082 ORTHO05D002130 3.4e-08 64.7 300 25.0
Dinv43817 Davidia involucrata HOM05D002082 ORTHO05D002130 5.9e-08 63.9 253 24.9
Glyma.13G335900 Glycine max HOM05D002515 ORTHO05D002722 5.9e-08 63.9 268 25.7
Peaxi162Scf00774g00001 Petunia axillaris HOM05D002515 ORTHO05D002722 5.9e-08 63.9 169 32.5
PGR119G0741 Punica granatum HOM05D002515 ORTHO05D002722 5.9e-08 63.9 256 21.9
TPR.G34265 Trifolium pratense HOM05D002515 ORTHO05D002722 5.9e-08 63.9 206 27.7
Gohir.A05G095700 Gossypium hirsutum HOM05D002515 ORTHO05D002722 7.7e-08 63.5 165 30.3
HanXRQChr02g0035881 Helianthus annuus HOM05D002515 ORTHO05D002722 7.7e-08 63.5 170 28.8
Nitab4.5_0004156g0040 Nicotiana tabacum HOM05D002515 ORTHO05D002722 7.7e-08 63.5 271 26.6
Oeu054145.1 Olea europaea HOM05D002515 ORTHO05D002722 7.7e-08 63.5 212 26.9
Actinidia37204 Actinidia chinensis HOM05D002515 ORTHO05D002722 1.0e-07 63.2 181 27.1
Ah.12g062380 Amaranthus hybridus HOM05D002515 ORTHO05D002722 1.0e-07 63.2 106 35.8
CANSAT54G1460 Cannabis sativa HOM05D002515 ORTHO05D002722 1.0e-07 63.2 149 29.5
Actinidia33420 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.3e-07 62.8 261 24.5
HPP92_000806 Vanilla planifolia HOM05D002515 ORTHO05D002722 1.3e-07 62.8 582 22.9
CSS0018360 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 2.2e-07 62.0 240 24.2
Ca_01328_v3 Cicer arietinum L. HOM05D002515 ORTHO05D002722 2.9e-07 61.6 195 26.7
Eucgr.D02291 Eucalyptus grandis HOM05D002082 ORTHO05D002130 2.9e-07 61.6 283 24.7
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 5.0e-07 60.8 206 25.2
VMungo1080G0109 Vigna mungo HOM05D002515 ORTHO05D002722 6.5e-07 60.5 210 25.7
ATR0680G229 Amborella trichopoda HOM05D002082 ORTHO05D002130 8.5e-07 60.1 254 23.6
Lj2A1062T48 Lonicera japonica HOM05D002515 ORTHO05D002722 8.5e-07 60.1 104 32.7
Cc01_g12840 Coffea canephora HOM05D002515 ORTHO05D002722 1.1e-06 59.7 310 23.5
Rhsim13G0082900 Rhododendron simsii HOM05D002515 ORTHO05D002722 1.9e-06 58.9 250 23.2
Actinidia07036 Actinidia chinensis HOM05D002515 ORTHO05D002722 4.2e-06 57.8 221 24.4
CiPaw.02G031000 Carya illinoinensis HOM05D002082 ORTHO05D002130 4.2e-06 57.8 310 21.9
Dinv32485 Davidia involucrata HOM05D002082 ORTHO05D002130 4.2e-06 57.8 107 28.0
TWI14G1346 Tripterygium wilfordii HOM05D002082 ORTHO05D002130 5.5e-06 57.4 312 21.5


User provided reference genes

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