Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0149800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 6.5e-25 117.1 83 100.0
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.0e-15 83.6 81 64.2
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 8.0e-15 83.6 81 64.2
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.4e-14 82.8 81 64.2
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.3e-14 82.0 81 63.0
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 8.8e-14 80.1 81 63.0
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 1.5e-13 79.3 81 63.0
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 1.5e-13 79.3 80 61.2
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 2.6e-13 78.6 81 60.5
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.4e-13 78.2 81 64.2
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.7e-13 77.4 81 63.0
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 7.5e-13 77.0 81 60.5
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 7.5e-13 77.0 81 63.0
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 2.8e-12 75.1 81 66.7
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.7e-12 74.7 80 66.2
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 6.3e-12 73.9 82 58.5
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 6.3e-12 73.9 83 60.2
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 6.3e-12 73.9 80 53.8
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 6.3e-12 73.9 81 60.5
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 1.1e-11 73.2 81 59.3
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 1.8e-11 72.4 81 65.4
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 1.8e-11 72.4 81 60.5
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.4e-11 72.0 82 58.5
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.4e-11 72.0 81 59.3
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.1e-11 71.6 81 53.1
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 3.1e-11 71.6 81 58.0
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 4.1e-11 71.2 82 56.1
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.1e-11 71.2 81 46.9
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 4.1e-11 71.2 81 59.3
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 4.1e-11 71.2 82 58.5
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 7.0e-11 70.5 82 56.1
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 7.0e-11 70.5 81 58.0
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 9.1e-11 70.1 81 56.8
HPP92_006614 Vanilla planifolia HOM05D002160 ORTHO05D002012 1.2e-10 69.7 81 58.0
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 2.0e-10 68.9 81 59.3
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.0e-10 68.9 80 60.0
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 2.0e-10 68.9 81 58.0
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.7e-10 68.6 85 58.8
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 2.7e-10 68.6 82 54.9
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 2.7e-10 68.6 81 56.8
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 2.7e-10 68.6 85 54.1
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.7e-10 68.6 81 55.6
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 3.5e-10 68.2 81 58.0
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 4.5e-10 67.8 81 56.8
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 4.5e-10 67.8 81 55.6
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 4.5e-10 67.8 81 55.6
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 4.5e-10 67.8 85 54.1
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.5e-10 67.8 83 49.4
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 4.5e-10 67.8 81 55.6
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 7.7e-10 67.0 81 56.8
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 7.7e-10 67.0 81 54.3
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 7.7e-10 67.0 81 56.8
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.0e-09 66.6 85 54.1
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 1.0e-09 66.6 85 54.1
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 1.3e-09 66.2 82 54.9
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.7e-09 65.9 80 55.0
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 1.7e-09 65.9 83 48.2
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 1.7e-09 65.9 83 42.2
Zm00001eb335880 Zea mays HOM05D002160 ORTHO05D002012 1.7e-09 65.9 61 57.4
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 2.2e-09 65.5 82 56.1
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 2.2e-09 65.5 83 53.0
AUR62019082 Chenopodium quinoa HOM05D002160 ORTHO05D002012 2.9e-09 65.1 83 51.8
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 2.9e-09 65.1 81 55.6
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.9e-09 65.1 84 53.6
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 2.9e-09 65.1 81 51.9
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.8e-09 64.7 84 54.8
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 3.8e-09 64.7 80 56.2
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 5.0e-09 64.3 80 55.0
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 5.0e-09 64.3 56 73.2
Zm00001eb124800 Zea mays HOM05D002160 ORTHO05D002012 5.0e-09 64.3 58 58.6
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 6.5e-09 63.9 84 54.8
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 6.5e-09 63.9 81 55.6
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 8.5e-09 63.5 82 56.1
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 8.5e-09 63.5 80 55.0
ClCG10G021120 Citrullus lanatus HOM05D002160 ORTHO05D002012 8.5e-09 63.5 82 59.8
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 8.5e-09 63.5 83 47.0
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 8.5e-09 63.5 82 58.5
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 1.1e-08 63.2 80 56.2
HPP92_028586 Vanilla planifolia HOM05D002160 ORTHO05D002012 1.5e-08 62.8 78 57.7
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.9e-08 62.4 82 42.7
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.9e-08 62.4 82 42.7
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 2.5e-08 62.0 83 54.2
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 3.2e-08 61.6 82 52.4
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 3.2e-08 61.6 82 51.2
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 3.2e-08 61.6 81 54.3
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 5.5e-08 60.8 80 53.8
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 7.2e-08 60.5 56 53.6
HPP92_026928 Vanilla planifolia HOM05D002160 ORTHO05D002012 7.2e-08 60.5 81 53.1
Sopen06g032540 Solanum pennellii HOM05D002160 ORTHO05D002012 9.4e-08 60.1 80 61.2
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.2e-07 59.7 80 52.5
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.2e-07 59.7 81 51.9
PGSC0003DMG401008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.6e-07 59.3 49 75.5
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.6e-07 59.3 81 51.9
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 2.1e-07 58.9 82 53.7
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 2.1e-07 58.9 82 53.7
MBI13_g34921_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.1e-07 58.9 54 64.8
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 2.7e-07 58.5 80 51.2
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 2.7e-07 58.5 82 53.7
Os12g0568200 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.7e-07 58.5 81 39.5
Os12g0571100 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.7e-07 58.5 81 40.7
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.7e-07 58.5 81 51.9
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 3.6e-07 58.2 82 53.7
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 3.6e-07 58.2 82 53.7
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.7e-07 57.8 81 54.3
vmacro20155 Vaccinium macrocarpon HOM05D002160 ORTHO05D002012 4.7e-07 57.8 48 79.2
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 6.1e-07 57.4 84 50.0
Os12g0568500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 1.0e-06 56.6 81 38.3
Manes.01G174200 Manihot esculenta HOM05D002160 ORTHO05D002012 1.4e-06 56.2 80 61.2
Manes.01G174400 Manihot esculenta HOM05D002160 ORTHO05D002012 1.4e-06 56.2 80 61.2
Manes.02G133200 Manihot esculenta HOM05D002160 ORTHO05D002012 1.4e-06 56.2 80 62.5
Manes.07G091300 Manihot esculenta HOM05D002160 ORTHO05D002012 1.4e-06 56.2 80 62.5
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 1.8e-06 55.8 80 52.5
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.8e-06 55.8 89 51.7
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 2.3e-06 55.5 80 46.2
Solyc06g076140.4 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.3e-06 55.5 80 61.2
MD06G1098000 Malus domestica HOM05D002160 ORTHO05D002012 3.0e-06 55.1 82 51.2
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 4.0e-06 54.7 78 53.8
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 4.0e-06 54.7 80 60.0
PGSC0003DMG400030321 Solanum tuberosum HOM05D002160 ORTHO05D002012 4.0e-06 54.7 80 61.2
Nitab4.5_0002557g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 5.2e-06 54.3 80 60.0
HanXRQChr03g0070901 Helianthus annuus HOM05D002160 ORTHO05D002012 6.8e-06 53.9 77 54.5
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 6.8e-06 53.9 80 51.2
Os05g0111300 Oryza sativa ssp. japonica HOM05D024798 ORTHO05D002012 8.8e-06 53.5 81 48.1
Os12g0570700 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 8.8e-06 53.5 81 50.6


User provided reference genes

Program Settings