Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 2.6e-38 161.8 92 100.0
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 4.0e-15 84.7 74 64.9
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 9.8e-14 80.1 68 61.8
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 1.7e-13 79.3 69 58.0
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 1.4e-12 76.3 67 59.7
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 1.8e-12 75.9 66 57.6
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 1.8e-12 75.9 63 61.9
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 5.4e-12 74.3 53 64.2
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 9.2e-12 73.6 84 51.2
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 2.0e-11 72.4 87 52.9
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 5.9e-11 70.9 63 55.6
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 5.9e-11 70.9 68 55.9
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.0e-10 70.1 67 55.2
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 1.0e-10 70.1 58 67.2
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 2.9e-10 68.6 62 54.8
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 3.8e-10 68.2 73 50.7
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 5.0e-10 67.8 66 53.0
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 6.6e-10 67.4 87 43.7
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 6.6e-10 67.4 64 59.4
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 8.6e-10 67.0 88 45.5
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 8.6e-10 67.0 76 52.6
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.1e-09 66.6 86 45.3
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.5e-09 66.2 82 46.3
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.5e-09 66.2 81 46.9
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 1.5e-09 66.2 63 54.0
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 1.9e-09 65.9 63 54.0
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 2.5e-09 65.5 68 52.9
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 2.5e-09 65.5 68 52.9
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 3.3e-09 65.1 77 54.5
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 3.3e-09 65.1 86 43.0
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 4.3e-09 64.7 86 46.5
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 4.3e-09 64.7 52 57.7
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 4.3e-09 64.7 62 51.6
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 5.6e-09 64.3 51 58.8
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 5.6e-09 64.3 85 43.5
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 7.3e-09 63.9 63 49.2
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 9.5e-09 63.5 89 42.7
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 9.5e-09 63.5 67 50.7
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 9.5e-09 63.5 66 50.0
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 9.5e-09 63.5 66 50.0
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.2e-08 63.2 63 50.8
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.6e-08 62.8 87 43.7
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.6e-08 62.8 87 43.7
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 1.6e-08 62.8 86 45.3
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 1.6e-08 62.8 63 54.0
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 2.1e-08 62.4 76 46.1
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 2.1e-08 62.4 77 42.9
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 2.1e-08 62.4 44 63.6
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 2.8e-08 62.0 81 45.7
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 3.6e-08 61.6 42 66.7
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 4.7e-08 61.2 85 42.4
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 6.1e-08 60.8 42 66.7
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 6.1e-08 60.8 42 66.7
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 6.1e-08 60.8 87 41.4
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 6.1e-08 60.8 88 40.9
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 6.1e-08 60.8 85 41.2
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 8.0e-08 60.5 61 47.5
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 8.0e-08 60.5 84 40.5
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 1.4e-07 59.7 95 44.2
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 1.4e-07 59.7 87 41.4
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 1.8e-07 59.3 42 64.3
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 2.3e-07 58.9 87 40.2
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.3e-07 58.9 87 40.2
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 4.0e-07 58.2 90 41.1
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 5.2e-07 57.8 52 53.8
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 6.8e-07 57.4 95 43.2
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 6.8e-07 57.4 88 43.2
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 8.9e-07 57.0 52 57.7
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 8.9e-07 57.0 52 57.7
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 1.2e-06 56.6 83 41.0
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 1.5e-06 56.2 66 45.5
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 2.6e-06 55.5 52 55.8
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 2.6e-06 55.5 52 55.8
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 3.4e-06 55.1 85 37.6
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 5.7e-06 54.3 93 39.8
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 5.7e-06 54.3 93 39.8


User provided reference genes

Program Settings