Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 2.4e-97 359.0 201 100.0
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 3.6e-29 132.5 197 45.7
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 3.6e-29 132.5 197 45.7
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 3.6e-29 132.5 197 45.7
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.1e-28 131.0 201 46.8
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.8e-28 130.2 199 46.7
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 2.4e-28 129.8 197 47.7
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.1e-28 129.4 199 46.2
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 4.0e-28 129.0 199 43.7
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 4.0e-28 129.0 198 47.0
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 1.2e-27 127.5 199 46.2
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 2.0e-27 126.7 198 41.9
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 2.6e-27 126.3 198 44.9
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 4.4e-27 125.6 199 46.7
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 5.8e-27 125.2 196 42.3
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 2.9e-26 122.9 198 40.9
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 3.8e-26 122.5 200 42.5
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 6.4e-26 121.7 198 43.4
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 3.2e-25 119.4 197 44.7
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 3.2e-25 119.4 199 46.7
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 9.2e-25 117.9 198 41.4
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 9.2e-25 117.9 201 43.3
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 9.2e-25 117.9 88 71.6
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 2.1e-24 116.7 201 44.3
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 2.7e-24 116.3 199 45.7
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 2.7e-24 116.3 197 41.1
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 2.7e-24 116.3 195 42.6
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 7.8e-24 114.8 194 46.9
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 7.8e-24 114.8 197 42.1
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.0e-23 114.4 199 42.2
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.0e-23 114.4 204 44.6
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.3e-23 114.0 198 42.4
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 1.3e-23 114.0 195 42.1
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 3.0e-23 112.8 199 44.2
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 3.9e-23 112.5 198 42.9
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 3.9e-23 112.5 195 43.6
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 5.1e-23 112.1 196 40.8
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 6.6e-23 111.7 195 41.0
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 6.6e-23 111.7 206 42.2
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 6.6e-23 111.7 201 44.8
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 1.1e-22 110.9 197 43.1
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 1.5e-22 110.5 199 42.2
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 1.5e-22 110.5 198 41.9
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.9e-22 110.2 210 44.3
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.9e-22 110.2 202 43.1
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 1.9e-22 110.2 198 42.9
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 3.3e-22 109.4 198 43.4
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 3.3e-22 109.4 201 42.3
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.3e-22 109.0 205 44.9
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 5.6e-22 108.6 198 41.9
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 7.3e-22 108.2 196 42.3
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 7.3e-22 108.2 199 40.7
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 9.6e-22 107.8 201 39.8
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 9.6e-22 107.8 200 41.5
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 9.6e-22 107.8 198 42.4
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.2e-21 107.5 199 40.2
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 1.6e-21 107.1 201 39.3
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 1.6e-21 107.1 197 44.7
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.6e-21 107.1 212 41.5
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.1e-21 106.7 198 41.4
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 2.8e-21 106.3 199 43.2
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 2.8e-21 106.3 198 42.9
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.6e-21 105.9 199 40.2
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.7e-21 105.5 196 43.4
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 4.7e-21 105.5 193 41.5
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 8.1e-21 104.8 198 40.4
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.4e-20 104.0 188 41.0
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 2.4e-20 103.2 198 40.9
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 2.4e-20 103.2 234 37.2
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.1e-20 102.8 211 43.6
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 3.1e-20 102.8 200 41.0
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 4.0e-20 102.4 196 41.8
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 4.0e-20 102.4 199 40.7
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 5.3e-20 102.1 196 39.8
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 5.3e-20 102.1 195 40.5
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 6.9e-20 101.7 201 39.8
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 9.0e-20 101.3 198 40.9
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 9.0e-20 101.3 188 40.4
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 9.0e-20 101.3 196 40.8
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 1.5e-19 100.5 197 41.1
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.0e-19 100.1 196 41.8
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 2.6e-19 99.8 198 39.9
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 4.4e-19 99.0 198 40.9
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 7.6e-19 98.2 196 39.8
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 9.9e-19 97.8 206 38.3
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 1.7e-18 97.1 196 40.3
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 2.2e-18 96.7 197 40.1
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.2e-18 96.7 188 39.4
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 2.2e-18 96.7 191 39.3
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.9e-18 96.3 196 37.2
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 3.8e-18 95.9 196 37.2
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 8.4e-18 94.7 200 41.5
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 1.1e-17 94.4 104 56.7
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.1e-17 94.4 224 41.5
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 1.9e-17 93.6 201 39.3
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 2.4e-17 93.2 194 38.1
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.4e-17 93.2 201 37.8
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 2.4e-17 93.2 197 40.6
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 5.4e-17 92.0 200 39.5
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 7.1e-17 91.7 196 38.3
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 7.1e-17 91.7 196 38.3
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 7.1e-17 91.7 196 38.3
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 7.1e-17 91.7 201 38.8
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 9.3e-17 91.3 135 48.1
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 1.0e-15 87.8 196 37.2
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 1.3e-15 87.4 196 33.7
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 1.7e-15 87.0 196 37.2
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.1e-14 84.3 180 38.9
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.5e-14 83.2 197 38.1
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 1.3e-13 80.9 181 38.7
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 2.1e-13 80.1 166 39.2
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 2.1e-13 80.1 114 49.1
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 2.8e-13 79.7 86 60.5
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 6.2e-13 78.6 198 34.8
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 8.1e-13 78.2 156 40.4
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.1e-12 76.3 198 36.9
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 4.0e-12 75.9 193 35.2
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 5.3e-12 75.5 189 34.9
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.0e-11 73.6 206 36.4
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 9.9e-11 71.2 146 43.8
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.7e-10 70.5 188 34.6
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 8.4e-10 68.2 167 38.3
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 1.1e-09 67.8 135 38.5
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 2.1e-08 63.5 182 36.8
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 7.9e-08 61.6 153 35.9
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.0e-07 61.2 114 37.7
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.9e-07 59.3 133 34.6
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 8.7e-07 58.2 190 34.7
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 1.5e-06 57.4 207 28.5
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 7.4e-06 55.1 89 38.2


User provided reference genes

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