Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 1.8e-238 828.9 447 100.0
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 3.3e-155 552.4 374 74.1
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.6e-154 550.1 409 69.4
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.6e-154 550.1 374 75.4
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 3.6e-154 548.9 409 69.2
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 4.7e-154 548.5 371 75.2
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 6.2e-154 548.1 432 66.0
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 3.1e-153 545.8 376 73.4
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 1.2e-152 543.9 374 73.0
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 2.6e-152 542.7 373 71.8
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 2.6e-152 542.7 384 72.4
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.9e-151 539.3 372 73.7
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 6.4e-151 538.1 376 70.5
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 6.4e-151 538.1 373 74.0
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 1.1e-150 537.3 374 70.9
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 1.4e-150 537.0 373 70.5
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 1.9e-150 536.6 374 70.9
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 2.4e-150 536.2 377 70.3
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.2e-150 535.8 373 73.2
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 7.0e-150 534.6 376 72.1
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 7.0e-150 534.6 376 72.1
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 9.2e-150 534.3 374 70.6
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 1.2e-149 533.9 376 71.5
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 3.5e-149 532.3 376 72.3
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 6.0e-149 531.6 373 72.7
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 6.0e-149 531.6 374 70.1
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 6.0e-149 531.6 374 71.9
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 6.0e-149 531.6 371 71.4
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 7.8e-149 531.2 373 70.5
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 1.0e-148 530.8 410 67.1
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 1.0e-148 530.8 373 70.0
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.3e-148 529.6 372 72.8
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 3.0e-148 529.3 374 71.4
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 3.9e-148 528.9 372 71.0
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 6.6e-148 528.1 374 72.2
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 1.9e-147 526.6 373 69.7
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 3.3e-147 525.8 374 69.5
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 5.6e-147 525.0 374 70.9
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 9.5e-147 524.2 377 68.4
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 1.6e-146 523.5 373 71.8
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 8.1e-146 521.2 372 71.2
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.8e-145 520.0 374 70.9
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.3e-145 519.6 377 67.9
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 4.0e-145 518.8 374 69.8
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 6.8e-145 518.1 374 68.2
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 8.9e-145 517.7 375 70.1
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.2e-144 517.3 374 69.3
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 1.5e-144 516.9 374 70.9
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.0e-144 516.5 374 69.3
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 4.4e-144 515.4 374 67.9
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 5.8e-144 515.0 374 69.8
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 7.5e-144 514.6 374 70.1
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 7.5e-144 514.6 373 70.8
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 7.5e-144 514.6 368 70.4
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 9.9e-144 514.2 389 67.6
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 1.3e-143 513.8 398 66.6
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 2.9e-143 512.7 373 69.7
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 1.1e-142 510.8 392 66.1
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 3.2e-142 509.2 374 69.0
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.2e-141 507.3 381 68.5
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.6e-141 506.9 421 63.4
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.6e-141 506.9 387 66.9
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 5.1e-140 501.9 369 69.1
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.5e-139 499.6 352 73.3
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 2.1e-138 496.5 371 67.7
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 4.7e-138 495.4 268 91.8
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.4e-136 488.8 374 66.8
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.7e-135 486.9 354 70.3
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 2.2e-135 486.5 350 69.7
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 4.9e-135 485.3 375 66.7
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 6.4e-135 485.0 369 66.4
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.1e-134 484.2 369 66.1
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 2.4e-134 483.0 369 66.4
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 9.2e-134 481.1 369 66.1
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 1.6e-133 480.3 371 67.4
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 1.6e-133 480.3 262 90.8
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 2.7e-133 479.6 368 66.0
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 3.9e-132 475.7 352 68.2
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 5.1e-132 475.3 372 64.8
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 4.3e-131 472.2 386 64.5
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 4.3e-131 472.2 386 64.5
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 2.1e-130 469.9 375 62.7
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 1.1e-129 467.6 374 65.5
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 1.4e-129 467.2 374 63.4
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 3.1e-129 466.1 373 64.6
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 4.0e-129 465.7 373 65.4
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 9.0e-129 464.5 372 64.5
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.5e-128 463.8 370 63.8
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 1.7e-127 460.3 376 63.8
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 2.7e-125 453.0 335 69.3
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 7.8e-125 451.4 350 65.4
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 1.7e-124 450.3 369 62.9
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 3.3e-123 446.0 349 65.9
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 9.0e-121 438.0 370 61.1
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 9.9e-120 434.5 373 58.4
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 9.9e-120 434.5 352 66.8
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.3e-119 434.1 372 59.9
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 4.6e-117 425.6 301 70.1
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 6.7e-116 421.8 373 58.2
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 1.1e-115 421.0 373 57.9
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 2.5e-115 419.9 357 59.4
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 7.4e-115 418.3 374 58.3
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 9.6e-115 417.9 373 57.6
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 4.8e-114 415.6 329 65.0
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 8.1e-114 414.8 371 57.1
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 1.8e-113 413.7 363 59.0
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 3.8e-111 406.0 438 51.8
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.7e-109 399.8 408 51.7
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 6.0e-109 398.7 340 62.4
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 9.6e-107 391.3 372 55.4
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 2.5e-102 376.7 353 57.8
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 3.5e-101 372.9 417 50.4
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 5.1e-100 369.0 340 56.2
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 7.4e-99 365.2 355 55.2
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 2.4e-97 360.1 372 54.0
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 3.1e-97 359.8 272 67.3
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.4e-92 344.4 350 56.6
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 3.4e-88 329.7 366 51.9
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.6e-83 313.5 224 67.9
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 1.7e-82 310.8 229 65.1
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 6.3e-74 282.3 202 71.8
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.7e-69 266.9 316 50.6
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 1.9e-62 244.2 330 42.7
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 5.9e-56 222.6 186 59.7
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.4e-43 180.3 153 63.4
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.0e-39 168.7 118 68.6
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 1.3e-39 168.3 174 50.0
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 4.0e-36 156.8 117 65.8
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 5.2e-36 156.4 141 57.4
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 7.5e-35 152.5 195 47.7
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 3.7e-34 150.2 118 65.3
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 4.9e-34 149.8 111 66.7
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 1.9e-33 147.9 138 56.5
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 4.1e-33 146.7 110 65.5
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 3.9e-31 140.2 163 49.1
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 5.6e-30 136.3 163 49.7
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 2.1e-29 134.4 113 63.7
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 6.2e-29 132.9 113 62.8
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 1.4e-28 131.7 111 64.9
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 2.4e-25 120.9 105 61.9
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 9.2e-25 119.0 74 78.4
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 8.1e-21 105.9 72 72.2
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 1.4e-20 105.1 339 26.5
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 1.8e-20 104.8 104 57.7
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-18 98.6 91 59.3
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.3e-18 98.6 347 27.1
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 6.4e-18 96.3 78 74.4
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 9.3e-17 92.4 63 74.6
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 1.6e-16 91.7 117 49.6
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 2.7e-16 90.9 79 58.2
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 1.3e-15 88.6 91 56.0
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 1.5e-14 85.1 141 40.4
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 9.6e-14 82.4 99 50.5
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 1.6e-13 81.6 69 58.0
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 1.6e-13 81.6 69 58.0
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 3.1e-12 77.4 57 66.7
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 5.3e-12 76.6 91 51.6
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 6.9e-12 76.3 71 53.5
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 2.6e-11 74.3 71 50.7
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 4.4e-11 73.6 62 59.7
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 7.6e-11 72.8 66 56.1
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 7.6e-11 72.8 75 60.0
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 1.2e-08 65.5 62 54.8
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 1.2e-08 65.5 62 54.8
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 1.2e-08 65.5 62 54.8
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 1.2e-08 65.5 62 54.8
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 6.0e-08 63.2 354 26.0
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 7.9e-08 62.8 62 53.2
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 5.1e-07 60.1 58 51.7


User provided reference genes

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