Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0138300 Oryza sativa ssp. japonica HOM05D026682 ORTHO05D004405 2.9e-159 565.1 266 100.0
Os01g0136400 Oryza sativa ssp. japonica HOM05D000260 ORTHO05D000318 2.9e-127 458.8 260 83.1
Zm00001eb124920 Zea mays HOM05D000260 ORTHO05D000318 9.6e-62 241.1 252 54.4
Os01g0136900 Oryza sativa ssp. japonica HOM05D000072 ORTHO05D000026 1.1e-44 184.5 265 45.3
Os01g0138400 Oryza sativa ssp. japonica HOM05D000072 ORTHO05D000026 3.7e-37 159.5 266 38.3
Zm00001eb124840 Zea mays HOM05D000072 ORTHO05D000026 5.3e-36 155.6 260 38.5
Zm00001eb124900 Zea mays HOM05D000260 ORTHO05D000318 1.2e-27 127.9 248 35.9
Os01g0136800 Oryza sativa ssp. japonica HOM05D000260 ORTHO05D000318 1.5e-27 127.5 265 34.3
Os01g0137282 Oryza sativa ssp. japonica HOM05D018962 ORTHO05D020946 3.4e-27 126.3 261 34.5
Os01g0137700 Oryza sativa ssp. japonica HOM05D026682 ORTHO05D020946 6.5e-26 122.1 229 35.8
Os01g0136700 Oryza sativa ssp. japonica HOM05D026682 ORTHO05D004405 2.5e-25 120.2 227 35.7
Zm00001eb124910 Zea mays HOM05D026682 ORTHO05D004405 1.7e-21 107.5 242 34.3
Medtr6g082850 Medicago truncatula HOM05D000260 ORTHO05D004405 6.5e-18 95.5 232 31.0
Haze_18720 Corylus avellana HOM05D000260 ORTHO05D004405 7.2e-17 92.0 243 27.6
Medtr6g083020 Medicago truncatula HOM05D000260 ORTHO05D000318 6.1e-16 89.0 232 31.0
Zm00001eb335540 Zea mays HOM05D000072 ORTHO05D004405 6.1e-16 89.0 250 29.2
A06p14440 Brassica napus HOM05D000260 ORTHO05D000318 8.0e-16 88.6 252 29.0
Medtr6g082990 Medicago truncatula HOM05D000260 ORTHO05D004405 1.0e-15 88.2 267 27.0
COL.COLO4_33401 Corchorus olitorius HOM05D000260 ORTHO05D004405 2.3e-15 87.0 247 27.9
CARHR018990 Cardamine hirsuta HOM05D000260 ORTHO05D000318 6.7e-15 85.5 271 27.7
BolC5t30365H Brassica oleracea HOM05D000260 ORTHO05D000318 8.8e-15 85.1 233 28.8
BraA06t24568Z Brassica rapa HOM05D000260 ORTHO05D000318 1.1e-14 84.7 246 28.0
AL1G30800 Arabidopsis lyrata HOM05D000260 ORTHO05D000318 4.4e-14 82.8 248 29.4
Cc11_g09730 Coffea canephora HOM05D000260 ORTHO05D004405 4.4e-14 82.8 245 29.8
VMungo0464G0601 Vigna mungo HOM05D000260 ORTHO05D004405 4.4e-14 82.8 251 27.5
Cfa019742 Carpinus fangiana HOM05D000260 ORTHO05D000318 5.7e-14 82.4 240 25.4
PSO063G1729 Papaver somniferum HOM05D000072 ORTHO05D000026 9.7e-14 81.6 252 27.4
Glyma.09G181960 Glycine max HOM05D000072 ORTHO05D000026 1.3e-13 81.3 257 29.6
Lj5g0005478 Lotus japonicus HOM05D000260 ORTHO05D000318 2.8e-13 80.1 246 23.6
PSO732G0336 Papaver somniferum HOM05D000022 ORTHO05D000071 2.8e-13 80.1 247 28.7
CiPaw.16G088300 Carya illinoinensis HOM05D000260 ORTHO05D000318 4.8e-13 79.3 247 28.3
FAN05G2194 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.1e-12 78.2 241 27.4
FAN09G3772 Fragaria x ananassa HOM05D001455 ORTHO05D001587 1.1e-12 78.2 241 27.4
Glyma.09G181600 Glycine max HOM05D000260 ORTHO05D000318 1.1e-12 78.2 241 27.8
Cc04_g06930 Coffea canephora HOM05D000260 ORTHO05D000318 1.8e-12 77.4 251 25.5
Glyma.07G095200 Glycine max HOM05D000072 ORTHO05D000026 1.8e-12 77.4 268 26.1
TPR.G22395 Trifolium pratense HOM05D000072 ORTHO05D000026 1.8e-12 77.4 229 30.1
FAN07G1554 Fragaria x ananassa HOM05D000260 ORTHO05D004405 2.4e-12 77.0 253 25.3
TPR.G4828 Trifolium pratense HOM05D000072 ORTHO05D000026 3.1e-12 76.6 251 26.7
Zm00001eb099770 Zea mays HOM05D000518 ORTHO05D004405 3.1e-12 76.6 248 26.6
Lj5g0001414 Lotus japonicus HOM05D000072 ORTHO05D000026 4.1e-12 76.3 248 23.4
Zm00001eb156230 Zea mays HOM05D000260 ORTHO05D004405 4.1e-12 76.3 255 27.5
Rhsim12G0142700 Rhododendron simsii HOM05D000260 ORTHO05D000318 5.3e-12 75.9 262 27.5
Eucgr.B00797 Eucalyptus grandis HOM05D000260 ORTHO05D004405 9.1e-12 75.1 242 24.8
MBI09_g25171_MAGBIO Magnolia biondii HOM05D000260 ORTHO05D000318 9.1e-12 75.1 269 28.6
arahy.Tifrunner.gnm1.ann1.63GLR8 Arachis hypogaea HOM05D000072 ORTHO05D000165 1.6e-11 74.3 235 23.8
ECA232G1450 Erigeron canadensis HOM05D002670 ORTHO05D000318 2.0e-11 73.9 236 24.2
Lsat_1_v5_gn_3_62301 Lactuca sativa HOM05D000072 ORTHO05D000026 2.0e-11 73.9 250 28.4
arahy.Tifrunner.gnm1.ann1.GW3QL7 Arachis hypogaea HOM05D000072 ORTHO05D000026 2.6e-11 73.6 235 23.4
Nitab4.5_0003652g0020 Nicotiana tabacum HOM05D000260 ORTHO05D000318 2.6e-11 73.6 260 28.8
HPP92_000488 Vanilla planifolia HOM05D000072 ORTHO05D000026 2.6e-11 73.6 240 27.9
CSS0023814 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 3.5e-11 73.2 259 25.9
Dinv00976 Davidia involucrata HOM05D000260 ORTHO05D000318 3.5e-11 73.2 292 27.1
Glyma.07G096000 Glycine max HOM05D000260 ORTHO05D004405 3.5e-11 73.2 252 25.8
Manes.05G132400 Manihot esculenta HOM05D000260 ORTHO05D004405 4.5e-11 72.8 237 26.6
CiPaw.04G042600 Carya illinoinensis HOM05D000072 ORTHO05D000026 5.9e-11 72.4 241 29.9
CSS0035427 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 7.7e-11 72.0 223 25.1
Dinv01101 Davidia involucrata HOM05D000260 ORTHO05D004405 7.7e-11 72.0 293 26.3
Migut.H00235 Erythranthe guttata HOM05D000260 ORTHO05D000318 7.7e-11 72.0 246 28.0
DCAR_007260 Daucus carota HOM05D000260 ORTHO05D000318 1.0e-10 71.6 238 27.3
Potri.010G145400 Populus trichocarpa HOM05D000260 ORTHO05D004405 1.0e-10 71.6 226 25.7
Atru.chr1.1005 Acer truncatum HOM05D000072 ORTHO05D000026 1.3e-10 71.2 258 27.1
MSTRG.13550 Avicennia marina HOM05D000260 ORTHO05D000318 1.3e-10 71.2 233 26.2
COL.COLO4_07247 Corchorus olitorius HOM05D000260 ORTHO05D004405 1.3e-10 71.2 258 25.2
Lsat_1_v5_gn_0_19021 Lactuca sativa HOM05D000072 ORTHO05D000026 1.3e-10 71.2 236 26.3
SGA_v2.0_scaffold38G14976 Striga asiatica HOM05D000260 ORTHO05D000318 1.3e-10 71.2 243 25.5
DCAR_015151 Daucus carota HOM05D000072 ORTHO05D000026 2.2e-10 70.5 232 25.9
Migut.H00231 Erythranthe guttata HOM05D000072 ORTHO05D000026 2.2e-10 70.5 247 28.7
HanXRQChr08g0213471 Helianthus annuus HOM05D000260 ORTHO05D004405 2.2e-10 70.5 237 26.6
Medtr1g110090 Medicago truncatula HOM05D000260 ORTHO05D004405 2.2e-10 70.5 248 23.0
QL10p025892 Quercus lobata HOM05D000260 ORTHO05D004405 2.2e-10 70.5 241 27.8
SalBow1G1521 Salvia bowleyana HOM05D000260 ORTHO05D000318 2.2e-10 70.5 221 25.8
CiPaw.04G043900 Carya illinoinensis HOM05D000260 ORTHO05D000318 2.9e-10 70.1 241 29.5
Potri.017G118250 Populus trichocarpa HOM05D000260 ORTHO05D000318 2.9e-10 70.1 269 27.9
TPR.G4871 Trifolium pratense HOM05D000260 ORTHO05D004405 3.8e-10 69.7 249 24.1
CiPaw.16G088400 Carya illinoinensis HOM05D000013 ORTHO05D000506 5.0e-10 69.3 237 27.0
Eucgr.B00789 Eucalyptus grandis HOM05D000260 ORTHO05D004405 5.0e-10 69.3 244 25.8
arahy.Tifrunner.gnm1.ann1.NYD0D7 Arachis hypogaea HOM05D000260 ORTHO05D004405 6.5e-10 68.9 235 24.7
Lj5A152G71 Lonicera japonica HOM05D000260 ORTHO05D000318 1.1e-09 68.2 236 27.5
Thecc.04G130400 Theobroma cacao HOM05D000072 ORTHO05D000026 1.1e-09 68.2 290 26.6
CSS0035733 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 1.9e-09 67.4 262 24.8
CDE06G0395 Ceratophyllum demersum HOM05D000260 ORTHO05D004405 1.9e-09 67.4 235 26.4
Lsat_1_v5_gn_8_143900 Lactuca sativa HOM05D000260 ORTHO05D004405 1.9e-09 67.4 236 27.5
QL10p026197 Quercus lobata HOM05D000260 ORTHO05D004405 1.9e-09 67.4 259 25.5
arahy.Tifrunner.gnm1.ann1.2U2D57 Arachis hypogaea HOM05D000072 ORTHO05D000026 2.5e-09 67.0 241 25.7
Duzib213G0625 Durio zibethinus HOM05D000072 ORTHO05D000026 2.5e-09 67.0 251 28.7
Lj2P833T28 Lonicera japonica HOM05D000260 ORTHO05D004405 3.2e-09 66.6 285 25.3
Medtr1g110230 Medicago truncatula HOM05D000072 ORTHO05D000026 3.2e-09 66.6 226 22.1
CSS0032470 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 5.5e-09 65.9 253 23.3
DCAR_015152 Daucus carota HOM05D000260 ORTHO05D000318 5.5e-09 65.9 254 26.0
Nitab4.5_0000753g0150 Nicotiana tabacum HOM05D000260 ORTHO05D000318 9.4e-09 65.1 221 30.3
Psat0s2891g0040 Pisum sativum HOM05D000072 ORTHO05D000026 9.4e-09 65.1 250 22.8
Atru.chr4.3004 Acer truncatum HOM05D007976 ORTHO05D004405 2.1e-08 63.9 248 27.0
HanXRQChr11g0325411 Helianthus annuus HOM05D000072 ORTHO05D000026 2.1e-08 63.9 240 26.2
Migut.D01586 Erythranthe guttata HOM05D000260 ORTHO05D000318 2.7e-08 63.5 231 24.7
Psat0s3198g0080 Pisum sativum HOM05D000072 ORTHO05D000026 6.1e-08 62.4 250 23.2
RcHm_v2.0_Chr4g0405811 Rosa chinensis HOM05D000072 ORTHO05D000026 6.1e-08 62.4 236 26.3
arahy.Tifrunner.gnm1.ann1.Z64X3Y Arachis hypogaea HOM05D000072 ORTHO05D000026 8.0e-08 62.0 231 23.4
Sopen02g030970 Solanum pennellii HOM05D000260 ORTHO05D000318 8.0e-08 62.0 223 27.4
MD09G1255100 Malus domestica HOM05D000260 ORTHO05D000318 1.0e-07 61.6 229 28.8
Sabra04G0065500 Salix brachista HOM05D000260 ORTHO05D000318 1.4e-07 61.2 224 29.5
Gohir.D11G171650 Gossypium hirsutum HOM05D000072 ORTHO05D000318 1.8e-07 60.8 231 25.5
Solyc12g036320.3 Solanum lycopersicum HOM05D000260 ORTHO05D004405 1.8e-07 60.8 264 26.9
Os01g0690200 Oryza sativa ssp. japonica HOM05D000260 ORTHO05D004405 2.3e-07 60.5 277 24.2
SGA_v2.0_scaffold168G38476 Striga asiatica HOM05D000260 ORTHO05D000318 2.3e-07 60.5 228 26.3
Prupe.3G145800 Prunus persica HOM05D000072 ORTHO05D000026 3.0e-07 60.1 236 25.4
VMungo1383G2523 Vigna mungo HOM05D000260 ORTHO05D000318 3.0e-07 60.1 247 25.9
Zm00001eb342890 Zea mays HOM05D000260 ORTHO05D000318 3.0e-07 60.1 209 29.7
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 4.0e-07 59.7 234 26.1
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 8.8e-07 58.5 225 25.3
Carub.0002s1316 Capsella rubella HOM05D000072 ORTHO05D000026 1.2e-06 58.2 261 24.9
Cc04_g06940 Coffea canephora HOM05D000072 ORTHO05D000026 1.2e-06 58.2 244 25.0
HPP92_021593 Vanilla planifolia HOM05D000260 ORTHO05D000318 1.2e-06 58.2 249 24.9
AUR62033802 Chenopodium quinoa HOM05D000260 ORTHO05D000318 1.5e-06 57.8 234 26.9
Haze_18706 Corylus avellana HOM05D000260 ORTHO05D004405 1.5e-06 57.8 63 44.4
AUR62023275 Chenopodium quinoa HOM05D000072 ORTHO05D000026 2.0e-06 57.4 231 27.3
Dinv30536 Davidia involucrata HOM05D000072 ORTHO05D000026 2.0e-06 57.4 257 24.9
MD06G1136000 Malus domestica HOM05D000072 ORTHO05D000026 2.0e-06 57.4 264 28.8
Sc14g0007350 Simmondsia chinensis HOM05D000260 ORTHO05D000318 2.0e-06 57.4 252 24.6
Gohir.A01G052200 Gossypium hirsutum HOM05D000072 ORTHO05D000026 2.6e-06 57.0 245 25.3
AUR62029904 Chenopodium quinoa HOM05D000260 ORTHO05D000318 7.5e-06 55.5 277 25.6
HPP92_027128 Vanilla planifolia HOM05D000260 ORTHO05D000318 7.5e-06 55.5 257 24.9


User provided reference genes

Program Settings