Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.7e-96 355.9 169 100.0
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 3.4e-81 305.1 168 86.3
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 4.2e-71 271.6 168 78.6
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.2e-71 271.6 168 78.6
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.2e-71 271.6 168 78.6
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.2e-71 271.6 168 78.6
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.2e-71 271.6 168 78.6
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.2e-71 271.6 168 78.6
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 5.5e-71 271.2 168 78.6
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 5.5e-71 271.2 168 78.0
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 1.6e-70 269.6 168 77.4
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 3.6e-70 268.5 169 74.0
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 4.7e-70 268.1 167 75.4
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 1.0e-69 266.9 168 77.4
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 1.0e-69 266.9 168 77.4
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 1.0e-69 266.9 168 77.4
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 1.0e-69 266.9 167 77.2
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 1.4e-69 266.5 168 76.2
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 1.8e-69 266.2 169 76.3
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.8e-69 266.2 168 76.2
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 2.3e-69 265.8 167 75.4
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 3.0e-69 265.4 168 75.0
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 3.0e-69 265.4 168 76.2
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 3.9e-69 265.0 168 78.0
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 5.1e-69 264.6 167 76.0
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 5.1e-69 264.6 168 76.8
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 8.8e-69 263.8 171 74.3
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 8.8e-69 263.8 171 74.3
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 8.8e-69 263.8 171 74.3
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 8.8e-69 263.8 169 75.1
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 8.8e-69 263.8 167 76.6
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 1.1e-68 263.5 168 76.2
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 1.1e-68 263.5 168 76.8
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 1.1e-68 263.5 168 75.0
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 1.1e-68 263.5 167 74.9
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.0e-68 262.7 168 76.2
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.0e-68 262.7 168 76.2
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 2.0e-68 262.7 168 76.2
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 2.0e-68 262.7 167 73.1
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 2.0e-68 262.7 168 75.6
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 2.6e-68 262.3 170 75.3
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 2.6e-68 262.3 167 76.6
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 2.6e-68 262.3 167 73.7
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 2.6e-68 262.3 167 73.7
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 2.6e-68 262.3 168 73.8
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 3.3e-68 261.9 168 75.0
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 3.3e-68 261.9 167 75.4
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 3.3e-68 261.9 167 76.0
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 5.7e-68 261.2 168 74.4
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 7.4e-68 260.8 185 70.3
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 7.4e-68 260.8 164 76.2
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 7.4e-68 260.8 167 76.0
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 9.7e-68 260.4 168 74.4
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 9.7e-68 260.4 168 76.8
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 9.7e-68 260.4 168 75.0
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 1.3e-67 260.0 171 74.3
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 1.7e-67 259.6 169 75.1
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 2.2e-67 259.2 168 74.4
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 2.2e-67 259.2 167 74.9
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 2.8e-67 258.8 166 75.9
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.8e-67 258.8 167 73.7
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.8e-67 258.8 168 73.2
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 2.8e-67 258.8 168 75.6
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.7e-67 258.5 168 73.2
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 3.7e-67 258.5 168 75.0
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 4.8e-67 258.1 169 75.7
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 4.8e-67 258.1 168 75.0
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 4.8e-67 258.1 167 73.7
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 4.8e-67 258.1 168 73.2
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.8e-67 258.1 168 72.0
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 4.8e-67 258.1 168 73.8
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 4.8e-67 258.1 168 70.8
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 6.3e-67 257.7 168 71.4
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 6.3e-67 257.7 167 73.1
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 6.3e-67 257.7 168 72.0
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 8.2e-67 257.3 165 75.2
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 1.1e-66 256.9 171 73.7
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 1.4e-66 256.5 167 73.1
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 1.4e-66 256.5 167 74.3
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 1.4e-66 256.5 167 73.7
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 1.4e-66 256.5 168 72.0
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 1.8e-66 256.1 168 71.4
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 1.8e-66 256.1 167 73.7
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 2.4e-66 255.8 167 73.7
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 2.4e-66 255.8 168 71.4
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 2.4e-66 255.8 167 74.3
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 5.3e-66 254.6 168 74.4
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 7.0e-66 254.2 168 74.4
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 1.2e-65 253.4 168 69.6
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 1.2e-65 253.4 169 72.2
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 1.5e-65 253.1 168 72.0
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 2.0e-65 252.7 167 73.1
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 2.0e-65 252.7 167 73.1
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 2.0e-65 252.7 167 73.1
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 2.0e-65 252.7 168 70.8
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 2.6e-65 252.3 162 74.1
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 2.6e-65 252.3 139 84.2
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 2.6e-65 252.3 168 70.8
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 3.5e-65 251.9 168 70.2
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 3.5e-65 251.9 168 70.8
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 3.5e-65 251.9 168 70.8
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 4.5e-65 251.5 158 72.8
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 4.5e-65 251.5 168 73.8
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 5.9e-65 251.1 167 72.5
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 7.7e-65 250.8 157 72.0
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 1.0e-64 250.4 172 72.1
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 1.3e-64 250.0 168 70.8
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 2.2e-64 249.2 168 68.5
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 2.9e-64 248.8 167 71.9
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 2.9e-64 248.8 168 69.6
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 3.8e-64 248.4 167 72.5
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 3.8e-64 248.4 168 73.8
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 3.8e-64 248.4 154 73.4
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 3.8e-64 248.4 175 70.9
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 3.8e-64 248.4 172 71.5
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 3.8e-64 248.4 168 70.8
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 5.0e-64 248.1 167 73.7
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 5.0e-64 248.1 168 70.8
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 5.0e-64 248.1 168 69.0
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 6.5e-64 247.7 158 75.3
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 6.5e-64 247.7 168 70.2
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 6.5e-64 247.7 168 70.8
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 6.5e-64 247.7 179 68.2
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 6.5e-64 247.7 168 69.0
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 6.5e-64 247.7 168 70.2
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 4.2e-63 245.0 167 71.3
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 2.7e-62 242.3 168 69.0
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 4.7e-62 241.5 200 61.5
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.7e-62 241.5 177 67.8
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 1.0e-61 240.4 168 69.0
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 1.8e-61 239.6 168 67.3
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 1.8e-61 239.6 182 64.3
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 2.3e-61 239.2 159 72.3
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 6.7e-61 237.7 200 60.0
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 8.8e-61 237.3 200 59.5
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 8.8e-61 237.3 140 75.0
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 9.7e-60 233.8 208 57.2
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.7e-59 233.0 140 74.3
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 5.3e-58 228.0 200 58.5
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 2.0e-57 226.1 191 58.1
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 6.5e-56 221.1 221 52.9
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 9.4e-55 217.2 139 70.5
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 8.8e-53 210.7 157 62.4
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.5e-52 209.9 145 69.7
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 2.6e-52 209.1 135 70.4
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 3.7e-51 205.3 148 62.8
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 7.0e-50 201.1 115 84.3
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 9.1e-50 200.7 180 58.3
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 1.6e-49 199.9 113 83.2
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 6.5e-48 194.5 150 62.7
CSS0043066 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.4e-45 186.8 127 72.4
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 2.0e-44 183.0 87 100.0
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 1.6e-41 173.3 126 69.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.7e-40 169.9 112 74.1
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 9.5e-39 164.1 117 68.4
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 2.3e-37 159.5 87 80.5
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 6.8e-37 157.9 94 75.5
SEGI_02132 Sequoiadendron giganteum HOM05D003702 ORTHO05D004653 8.9e-37 157.5 98 72.4
Zm00001eb367010 Zea mays HOM05D003702 ORTHO05D004653 5.9e-33 144.8 90 76.7
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 4.3e-31 138.7 72 83.3
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 2.1e-30 136.3 73 83.6
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 1.8e-29 133.3 127 58.3
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 9.8e-28 127.5 140 47.9
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.2e-26 122.5 68 76.5
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 1.1e-18 97.4 70 57.1
SHI16230 Sapria himalayana HOM05D000105 ORTHO05D000023 1.6e-17 93.6 125 40.8
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 3.0e-16 89.4 81 51.9
CSS0004358 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 2.1e-14 83.2 40 85.0
Aqoxy7G02147 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.8e-13 80.1 40 85.0
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 2.2e-11 73.2 37 78.4


User provided reference genes

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