Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 1.2e-161 573.5 377 100.0
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 2.2e-104 383.3 375 57.6
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 2.2e-96 356.7 354 58.2
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 2.7e-49 200.3 223 44.4
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.7e-49 200.3 226 43.4
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 1.0e-48 198.4 246 41.1
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 2.2e-48 197.2 246 40.7
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.2e-48 197.2 212 44.8
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 3.8e-48 196.4 224 42.4
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 6.5e-48 195.7 246 40.2
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 1.5e-47 194.5 223 43.5
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.5e-47 194.5 226 42.5
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 1.9e-47 194.1 223 43.0
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 1.9e-47 194.1 223 43.0
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 3.2e-47 193.4 246 39.8
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 4.2e-47 193.0 246 38.6
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 5.5e-47 192.6 223 43.0
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 1.6e-46 191.0 223 43.0
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 2.8e-46 190.3 260 38.8
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 3.6e-46 189.9 247 39.3
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 4.7e-46 189.5 283 37.1
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 8.0e-46 188.7 260 38.5
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.8e-45 187.6 247 38.9
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 2.3e-45 187.2 226 42.0
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 3.0e-45 186.8 246 39.4
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 3.0e-45 186.8 262 38.9
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 3.0e-45 186.8 255 38.8
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 4.0e-45 186.4 255 39.6
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 5.2e-45 186.0 246 37.4
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 5.2e-45 186.0 224 43.3
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 8.8e-45 185.3 245 38.4
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 8.8e-45 185.3 261 37.9
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.2e-44 184.9 227 41.9
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.2e-44 184.9 224 43.8
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 1.5e-44 184.5 262 38.5
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 3.4e-44 183.3 257 38.5
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 4.4e-44 183.0 239 42.3
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 4.4e-44 183.0 246 40.2
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 4.4e-44 183.0 233 41.2
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 5.7e-44 182.6 246 39.4
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 9.8e-44 181.8 260 39.6
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 9.8e-44 181.8 246 39.0
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 9.8e-44 181.8 268 39.2
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 9.8e-44 181.8 247 38.5
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 2.2e-43 180.6 261 37.2
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 2.2e-43 180.6 226 38.9
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 2.8e-43 180.3 246 39.4
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 2.8e-43 180.3 245 39.6
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 3.7e-43 179.9 256 36.7
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 4.9e-43 179.5 246 37.0
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 4.9e-43 179.5 260 39.2
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 6.3e-43 179.1 272 37.5
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 6.3e-43 179.1 269 37.9
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 8.3e-43 178.7 272 37.5
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.4e-42 177.9 210 43.3
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.4e-42 177.9 272 37.1
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 1.8e-42 177.6 257 39.3
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 2.4e-42 177.2 227 41.4
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 3.1e-42 176.8 243 38.7
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 3.1e-42 176.8 246 37.4
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 4.1e-42 176.4 229 39.3
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 4.1e-42 176.4 226 39.4
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 7.0e-42 175.6 226 41.2
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 7.0e-42 175.6 255 38.8
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 7.0e-42 175.6 272 36.8
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 7.0e-42 175.6 271 35.4
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 7.0e-42 175.6 246 37.8
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 9.2e-42 175.3 234 39.7
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 9.2e-42 175.3 233 38.6
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 9.2e-42 175.3 233 39.1
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 9.2e-42 175.3 226 41.2
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 1.6e-41 174.5 227 37.0
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.6e-41 174.5 257 38.5
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 2.7e-41 173.7 234 39.7
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 3.5e-41 173.3 255 39.2
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 3.5e-41 173.3 210 40.5
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 4.5e-41 172.9 223 40.4
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 4.5e-41 172.9 224 39.7
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 5.9e-41 172.6 244 38.5
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 5.9e-41 172.6 257 38.1
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 7.8e-41 172.2 236 38.1
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 7.8e-41 172.2 255 38.4
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 1.0e-40 171.8 226 38.5
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 1.7e-40 171.0 243 39.1
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 1.7e-40 171.0 257 36.2
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 1.7e-40 171.0 260 36.2
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 3.8e-40 169.9 232 36.6
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 3.8e-40 169.9 226 36.7
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 5.0e-40 169.5 273 35.2
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 1.1e-39 168.3 263 35.4
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 1.5e-39 167.9 236 36.4
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 1.5e-39 167.9 263 35.0
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 1.9e-39 167.5 263 35.0
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 2.5e-39 167.2 219 39.7
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 2.5e-39 167.2 223 38.6
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 4.3e-39 166.4 219 38.8
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 4.3e-39 166.4 212 42.0
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 4.3e-39 166.4 246 36.2
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 7.3e-39 165.6 222 39.2
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 9.5e-39 165.2 256 36.3
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 2.8e-38 163.7 247 36.0
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 8.0e-38 162.2 227 38.3
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 1.0e-37 161.8 210 39.0
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 1.0e-37 161.8 257 35.0
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 1.0e-37 161.8 224 36.2
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 6.8e-37 159.1 254 35.8
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 1.5e-36 157.9 254 35.0
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 5.7e-36 156.0 247 34.8
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 8.3e-35 152.1 257 36.2
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 2.7e-33 147.1 179 37.4
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 2.3e-32 144.1 255 32.2
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 1.1e-31 141.7 218 35.3
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 2.5e-31 140.6 226 35.4
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 2.4e-26 124.0 295 28.1
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 2.7e-25 120.6 172 38.4
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 1.1e-23 115.2 163 37.4
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 1.4e-18 98.2 226 31.0
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 2.1e-17 94.4 286 26.2
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 1.8e-13 81.3 89 41.6
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 8.4e-11 72.4 313 23.6
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 8.4e-11 72.4 313 23.6
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 1.7e-08 64.7 164 28.0
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 6.6e-08 62.8 288 21.9
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 5.6e-07 59.7 205 24.9
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 2.1e-06 57.8 249 27.3


User provided reference genes

Program Settings