Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.2e-194 682.2 364 100.0
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 6.3e-165 584.3 371 87.6
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 1.6e-147 526.6 381 73.5
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 6.4e-125 451.4 361 64.8
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 8.3e-125 451.1 361 64.8
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 1.5e-121 440.3 363 63.9
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 2.5e-121 439.5 363 62.0
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 4.3e-121 438.7 362 63.0
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.6e-121 438.3 362 63.0
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.6e-121 438.3 362 63.0
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 1.2e-120 437.2 363 62.8
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 2.1e-120 436.4 363 62.0
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 2.8e-120 436.0 363 62.8
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 2.8e-120 436.0 407 58.0
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 4.7e-120 435.3 363 61.2
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 4.7e-120 435.3 318 68.6
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 4.7e-120 435.3 363 62.3
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 1.8e-119 433.3 364 64.8
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 3.1e-119 432.6 363 61.2
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 6.8e-119 431.4 327 66.7
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 2.6e-118 429.5 363 61.4
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.6e-118 429.5 370 60.8
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 4.4e-118 428.7 364 61.5
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 9.9e-118 427.6 370 61.1
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.9e-117 426.0 370 60.3
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 4.9e-117 425.2 364 62.9
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 1.1e-116 424.1 363 62.8
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 1.9e-116 423.3 363 60.6
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 2.4e-116 422.9 362 61.3
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 3.2e-116 422.5 368 60.9
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 3.2e-116 422.5 360 61.7
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 9.2e-116 421.0 366 60.4
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 1.2e-115 420.6 342 62.3
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 2.1e-115 419.9 417 56.1
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 2.1e-115 419.9 399 56.4
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 3.5e-115 419.1 405 55.8
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 4.6e-115 418.7 362 61.9
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 1.7e-114 416.8 362 58.8
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 8.7e-114 414.5 349 61.0
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 1.5e-113 413.7 350 60.9
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 1.5e-113 413.7 316 66.1
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 2.5e-113 412.9 323 64.4
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 5.6e-113 411.8 367 57.8
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 5.6e-113 411.8 359 60.2
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 5.6e-113 411.8 366 59.0
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 5.6e-113 411.8 361 59.3
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 2.8e-112 409.5 364 60.2
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 3.6e-112 409.1 327 63.6
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 6.2e-112 408.3 357 60.5
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 6.2e-112 408.3 320 64.1
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 8.1e-112 407.9 318 63.8
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 8.1e-112 407.9 364 57.1
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.1e-111 407.5 411 54.7
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 1.4e-111 407.1 373 58.2
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 3.1e-111 406.0 323 63.5
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 3.1e-111 406.0 318 63.8
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 4.0e-111 405.6 372 57.3
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 5.3e-111 405.2 363 57.6
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 5.3e-111 405.2 317 64.7
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 6.9e-111 404.8 361 59.3
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 9.0e-111 404.4 325 63.1
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 1.2e-110 404.1 326 62.6
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 1.5e-110 403.7 368 59.0
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 2.0e-110 403.3 364 58.0
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 2.0e-110 403.3 361 58.7
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 2.6e-110 402.9 318 62.6
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 2.6e-110 402.9 323 62.5
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 5.8e-110 401.7 374 56.4
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 5.8e-110 401.7 325 62.8
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 7.6e-110 401.4 318 64.5
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 9.9e-110 401.0 454 50.0
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 9.9e-110 401.0 410 54.4
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 1.7e-109 400.2 310 65.5
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 2.2e-109 399.8 411 54.0
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 4.9e-109 398.7 365 57.8
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 6.4e-109 398.3 303 67.0
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.4e-108 397.1 385 56.1
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 2.4e-108 396.4 310 64.5
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 4.2e-108 395.6 324 62.0
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 4.2e-108 395.6 324 62.0
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 5.4e-108 395.2 310 64.5
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.6e-107 393.7 368 55.4
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.6e-107 393.7 348 58.9
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 3.5e-107 392.5 370 59.5
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 6.0e-107 391.7 311 64.3
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 8.7e-106 387.9 371 58.0
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 1.5e-105 387.1 315 64.1
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 3.1e-103 379.4 299 65.9
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 4.0e-103 379.0 297 66.3
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 5.3e-103 378.6 364 59.1
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 5.3e-103 378.6 297 66.0
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 4.5e-102 375.6 314 61.8
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.9e-101 372.9 348 56.9
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 7.1e-100 368.2 376 53.5
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 7.1e-100 368.2 369 57.2
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 1.2e-99 367.5 372 56.5
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 3.0e-98 362.8 360 57.2
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.9e-98 362.5 348 58.9
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 6.7e-98 361.7 348 58.9
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 6.7e-98 361.7 348 58.9
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.6e-97 358.6 348 58.6
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.3e-96 357.5 348 58.3
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 2.1e-96 356.7 310 58.4
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 2.4e-95 353.2 366 56.6
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 1.2e-94 350.9 362 54.1
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.5e-94 350.5 272 66.5
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 2.5e-92 343.2 360 51.4
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 1.5e-89 334.0 290 59.7
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 1.5e-89 334.0 290 59.7
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 1.2e-86 324.3 404 45.5
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 6.3e-80 302.0 321 49.8
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.5e-78 297.4 270 57.4
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 7.7e-70 268.5 322 49.4
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 2.1e-67 260.4 219 60.7
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.0e-66 258.1 221 57.9
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.3e-64 251.1 220 59.5
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.1e-60 238.0 223 57.4
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.8e-55 220.7 255 49.4
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 2.9e-53 213.4 376 36.7
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.4e-47 192.6 150 63.3
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 8.8e-42 175.3 152 61.8
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 5.7e-41 172.6 121 66.1
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 1.6e-35 154.5 124 64.5
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 2.8e-35 153.7 143 55.2
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.6e-33 147.1 128 57.8
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 7.0e-31 139.0 115 61.7
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 2.7e-22 110.5 79 65.8
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.2e-17 95.1 145 43.4
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 6.4e-16 89.4 65 66.2
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 2.1e-14 84.3 423 24.3
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 2.3e-13 80.9 72 58.3
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 6.2e-11 72.8 70 52.9
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 1.4e-07 61.6 52 61.5
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 3.5e-06 57.0 49 61.2


User provided reference genes

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