Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 2597.0 1329 100.0
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1821.2 1303 72.6
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1778.1 1321 70.5
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1742.6 1329 68.5
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1729.5 1308 68.3
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1719.5 1364 67.2
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1715.7 1303 67.5
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1708.3 1307 68.2
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1705.6 1334 66.5
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1703.0 1319 66.9
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1703.0 1308 67.7
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1701.0 1310 67.9
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1697.2 1311 66.5
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1693.7 1303 68.2
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1688.7 1333 67.0
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1687.2 1305 67.2
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1686.4 1306 67.4
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1685.2 1306 67.2
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1684.8 1352 65.8
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1684.5 1308 67.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1677.1 1320 65.8
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1676.8 1317 66.7
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1672.1 1326 66.7
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1669.4 1337 65.5
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1668.3 1311 66.4
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1667.1 1337 65.5
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1666.4 1315 66.5
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1666.0 1337 65.5
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1664.4 1332 65.5
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1659.0 1341 65.0
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1651.3 1308 66.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1650.6 1311 66.7
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1650.2 1383 63.6
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1648.6 1330 64.2
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1647.9 1308 66.9
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1647.9 1328 65.2
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1647.9 1365 64.2
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1644.4 1333 64.6
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1641.7 1322 65.1
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1637.5 1314 64.7
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1636.7 1320 64.6
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1634.0 1326 64.5
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1632.5 1332 64.6
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1630.9 1333 64.3
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1629.0 1321 64.1
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1625.9 1324 64.2
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1625.1 1327 63.7
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1624.8 1323 63.9
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1622.4 1308 65.4
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1620.9 1313 64.6
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1619.8 1384 62.7
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1615.9 1330 62.6
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1612.0 1328 63.3
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1606.7 1333 63.5
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1606.3 1221 69.6
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1605.1 1306 64.7
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1600.5 1310 63.9
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1600.1 1241 66.9
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1595.1 1331 62.7
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1588.9 1333 62.3
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1586.2 1327 63.6
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1584.3 1334 62.1
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1582.4 1333 62.9
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1582.4 1305 62.7
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1577.4 1337 63.1
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1574.7 1314 64.0
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1571.6 1338 63.2
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1571.2 1335 63.5
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1563.5 1317 63.1
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1554.3 1381 59.8
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1545.8 1328 62.0
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1543.5 1338 62.2
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1537.7 1242 64.7
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1534.2 1237 65.2
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1534.2 1316 62.1
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1530.8 1309 62.8
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1529.6 1329 60.3
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1529.2 1306 61.1
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1528.5 1306 62.6
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1527.3 1284 62.8
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1523.5 1325 61.9
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1515.4 1334 61.4
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1515.4 1333 61.4
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1515.0 1334 61.4
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1501.5 1064 72.4
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1497.3 1304 61.8
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1494.9 1258 63.3
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1484.5 1310 60.9
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1479.9 1307 60.1
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1476.1 1335 60.5
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1416.7 1266 60.5
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1366.3 1078 65.4
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1366.3 1316 55.3
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1347.0 1308 55.9
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1341.3 1334 54.0
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1300.0 1113 62.9
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1259.2 926 69.2
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1164.4 1306 51.7
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 0.0e+00 1109.0 793 69.4
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1094.3 1315 46.8
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1093.6 1324 46.5
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1091.6 1021 57.0
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 0.0e+00 1090.9 815 68.6
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1076.6 885 63.6
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 2.4e-286 989.6 1018 54.9
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 1.7e-284 983.4 1272 43.9
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 6.7e-273 944.9 719 69.3
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.8e-254 883.6 1297 41.4
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 7.6e-200 702.2 1395 34.2
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 6.4e-191 672.5 608 61.5
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 5.3e-185 652.9 600 56.3
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 2.1e-181 641.0 623 55.4
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.9e-180 636.7 473 70.8
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.3e-175 621.7 1453 32.5
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 8.5e-167 592.4 502 64.3
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.2e-162 577.8 1336 30.8
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 1.2e-144 518.8 730 44.9
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.3e-119 435.6 1215 29.5
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.1e-118 432.6 376 61.2
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 2.9e-106 391.3 756 38.1
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 2.8e-101 374.8 251 73.7
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.0e-95 354.8 353 55.0
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.9e-94 352.1 267 66.7
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.9e-94 352.1 267 66.7
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 6.4e-90 337.0 259 71.0
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.1e-88 332.0 255 69.0
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 8.4e-74 283.5 201 68.7
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.2e-73 281.2 235 60.9
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 3.2e-57 228.4 179 66.5
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.2e-49 201.8 161 65.2
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 1.0e-47 196.8 175 61.1
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.0e-42 180.3 161 57.1
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.0e-42 177.9 104 75.0
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.7e-37 162.9 223 45.3
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 5.2e-31 141.4 111 67.6
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 6.5e-26 124.4 119 62.2
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 2.3e-23 115.9 1294 21.2
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 6.8e-23 114.4 132 43.9
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 4.4e-22 111.7 120 49.2
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 9.8e-22 110.5 120 49.2
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 2.2e-21 109.4 158 41.8
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 8.3e-21 107.5 64 85.9
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.2e-19 103.6 165 42.4
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.1e-17 97.1 123 46.3
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.0e-15 89.0 62 66.1
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 7.5e-14 84.3 529 23.6
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 8.3e-13 80.9 114 39.5
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 2.4e-12 79.3 78 53.8
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 2.3e-10 72.8 50 76.0
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 4.3e-09 68.6 79 44.3
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 2.8e-08 65.9 47 70.2
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 3.6e-08 65.5 70 45.7
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 4.4e-06 58.5 52 48.1


User provided reference genes

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