Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 9.5e-104 380.2 192 100.0
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.6e-58 229.9 182 67.0
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 1.4e-57 226.9 184 65.2
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 2.3e-57 226.1 184 60.9
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.1e-57 224.9 185 62.7
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.1e-56 223.8 185 62.7
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.9e-56 223.0 184 62.5
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.7e-56 221.5 185 62.2
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 6.3e-55 218.0 184 61.4
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.1e-54 215.7 185 61.1
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.1e-54 215.7 185 61.1
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.1e-54 215.7 185 61.1
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.3e-54 214.9 184 60.3
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 6.9e-54 214.5 183 61.7
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 9.1e-54 214.2 185 58.4
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.0e-53 213.0 184 60.9
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.6e-53 212.6 184 61.4
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 3.4e-53 212.2 183 57.4
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 5.0e-52 208.4 183 59.6
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 4.2e-51 205.3 187 55.6
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 4.7e-50 201.8 186 56.5
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 6.1e-50 201.4 182 58.2
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 3.9e-49 198.7 199 54.8
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 8.8e-49 197.6 185 61.6
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 2.0e-48 196.4 184 58.2
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.6e-48 196.1 184 56.5
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 4.4e-48 195.3 182 57.1
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 4.4e-48 195.3 187 55.6
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 3.7e-47 192.2 184 55.4
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 5.3e-46 188.3 183 53.0
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 5.3e-46 188.3 183 53.0
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 7.0e-46 188.0 185 59.5
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 2.0e-45 186.4 187 56.1
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.0e-45 186.4 187 53.5
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 2.0e-45 186.4 185 54.1
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 7.7e-45 184.5 185 54.1
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 6.5e-44 181.4 184 53.3
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 1.4e-43 180.3 183 53.6
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 4.2e-43 178.7 188 52.1
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 9.4e-43 177.6 188 52.1
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.6e-42 175.6 184 50.0
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 3.6e-42 175.6 184 50.0
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 4.7e-42 175.3 184 54.9
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 1.4e-41 173.7 181 50.3
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 2.3e-41 172.9 182 50.5
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.3e-41 172.9 182 50.5
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 2.6e-40 169.5 184 51.6
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 3.3e-40 169.1 185 49.7
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 5.7e-40 168.3 184 49.5
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 7.4e-40 167.9 185 51.9
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.8e-39 166.0 185 52.4
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 4.8e-39 165.2 188 53.7
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 4.8e-39 165.2 180 50.6
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.4e-38 163.7 198 51.0
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 1.4e-38 163.7 184 49.5
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.1e-38 161.0 185 50.3
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.2e-37 160.6 182 50.5
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 4.5e-37 158.7 185 47.0
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 7.7e-37 157.9 184 50.0
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 7.7e-37 157.9 190 46.8
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 1.0e-36 157.5 183 47.5
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 2.2e-36 156.4 184 47.8
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.2e-36 156.4 183 46.4
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 5.0e-36 155.2 188 49.5
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 6.5e-36 154.8 183 47.5
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 2.5e-35 152.9 187 47.1
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.5e-35 152.9 188 45.7
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 2.5e-35 152.9 182 48.4
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.2e-35 152.5 183 44.8
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 9.4e-35 151.0 185 48.1
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.2e-34 150.6 186 47.3
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 4.7e-34 148.7 184 47.8
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 6.1e-34 148.3 183 45.9
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 1.0e-33 147.5 189 45.0
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.2e-32 144.1 184 44.6
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.2e-32 144.1 182 47.8
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.5e-32 143.7 190 43.2
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.5e-32 143.7 190 43.2
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.5e-32 143.7 191 43.5
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 7.5e-32 141.4 177 44.6
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 7.5e-32 141.4 189 44.4
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.7e-31 140.2 180 44.4
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 2.2e-31 139.8 191 44.5
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 4.8e-31 138.7 186 46.8
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.8e-31 138.7 177 44.1
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 4.8e-31 138.7 184 42.9
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 6.3e-31 138.3 177 44.6
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 8.2e-31 137.9 175 45.1
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.1e-30 137.5 181 42.5
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 2.4e-30 136.3 183 45.9
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 5.3e-30 135.2 183 39.9
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 5.3e-30 135.2 183 38.3
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 5.3e-30 135.2 183 38.3
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 7.0e-30 134.8 186 40.9
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 9.1e-30 134.4 180 43.9
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.6e-29 133.7 180 41.1
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 2.7e-29 132.9 183 37.7
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 2.7e-29 132.9 183 38.8
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 3.5e-29 132.5 183 40.4
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 3.5e-29 132.5 183 38.3
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.0e-28 131.0 177 40.1
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.0e-28 131.0 183 38.8
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.9e-28 129.4 180 42.2
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.9e-28 129.4 180 42.2
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 3.8e-28 129.0 180 41.1
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 3.8e-28 129.0 180 41.1
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 3.8e-28 129.0 180 40.6
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 3.8e-28 129.0 180 40.0
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 5.0e-28 128.6 184 44.0
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.5e-27 127.1 183 39.3
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.5e-27 127.1 183 39.3
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 1.9e-27 126.7 183 37.7
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.9e-27 126.7 180 40.6
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 5.5e-27 125.2 183 41.0
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 9.4e-27 124.4 187 40.1
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.6e-26 123.6 181 40.9
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 3.6e-26 122.5 180 40.0
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 1.0e-25 120.9 180 40.0
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 3.4e-24 115.9 181 40.9
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 4.4e-24 115.5 173 40.5
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.7e-23 113.6 182 37.9
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 3.7e-23 112.5 181 37.6
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 8.3e-23 111.3 180 37.2
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.4e-22 109.8 185 38.9
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 3.1e-22 109.4 183 37.2
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.1e-22 109.4 154 42.9
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 5.4e-22 108.6 76 68.4
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 2.7e-21 106.3 75 70.7
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.3e-20 104.0 140 45.0
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 1.3e-20 104.0 77 61.0
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-20 103.6 111 45.0
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.9e-20 102.8 156 41.0
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 3.8e-20 102.4 154 40.9
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 4.2e-19 99.0 62 77.4
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 9.5e-19 97.8 79 57.0
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 2.6e-16 89.7 183 32.2
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.2e-13 80.9 179 33.5
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 5.9e-13 78.6 222 32.9
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 4.3e-11 72.4 59 52.5
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 3.6e-10 69.3 64 50.0
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 1.9e-06 57.0 76 35.5


User provided reference genes

Program Settings