Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.7e-129 465.3 228 100.0
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 2.5e-95 352.4 229 78.6
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.3e-95 351.7 228 76.3
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.1e-94 349.4 228 78.1
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.1e-94 349.4 227 76.7
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 2.8e-94 349.0 228 78.1
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 6.2e-94 347.8 233 77.7
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.8e-93 346.3 231 76.2
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 3.1e-93 345.5 213 77.0
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 5.3e-93 344.7 230 76.5
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 9.0e-93 344.0 229 76.0
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.6e-92 342.4 230 76.1
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 7.6e-92 340.9 231 74.9
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.0e-91 340.5 230 76.5
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 2.2e-91 339.3 214 79.9
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 2.2e-91 339.3 212 78.8
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 6.4e-91 337.8 213 78.4
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 8.4e-91 337.4 233 73.8
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.1e-90 337.0 218 76.6
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.9e-90 336.3 207 78.7
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.9e-90 336.3 213 77.5
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.2e-90 335.5 227 74.4
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 7.1e-90 334.3 229 74.2
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 9.3e-90 334.0 213 77.0
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 9.3e-90 334.0 213 77.0
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.6e-89 333.2 214 76.2
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.6e-89 333.2 232 74.6
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.6e-89 333.2 232 74.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.6e-89 333.2 214 78.5
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.6e-89 333.2 228 74.1
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 3.5e-89 332.0 217 77.4
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 4.6e-89 331.6 213 77.5
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-89 331.6 232 74.1
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.6e-89 331.6 232 74.1
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.9e-89 330.9 232 74.1
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 7.9e-89 330.9 230 74.3
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.0e-88 328.9 213 76.5
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 3.0e-88 328.9 232 72.8
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.0e-88 328.9 216 77.3
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.0e-88 328.9 223 72.6
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.9e-88 328.6 214 76.2
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.9e-88 328.6 231 73.6
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 5.1e-88 328.2 228 72.8
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 5.1e-88 328.2 217 76.5
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 5.1e-88 328.2 218 75.7
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 6.7e-88 327.8 215 76.3
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.1e-87 327.0 231 73.2
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.9e-87 326.2 213 78.4
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 2.5e-87 325.9 217 73.7
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.3e-87 325.1 212 74.1
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 5.7e-87 324.7 217 72.8
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 7.4e-87 324.3 219 74.9
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 7.4e-87 324.3 215 74.0
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 9.6e-87 323.9 231 72.3
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.3e-86 323.6 215 76.3
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.6e-86 323.2 215 73.5
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 2.8e-86 322.4 212 75.9
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.8e-86 322.4 231 72.7
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 3.7e-86 322.0 204 75.5
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.8e-86 321.6 232 73.7
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.8e-86 321.6 232 73.7
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 8.2e-86 320.9 231 72.7
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 5.3e-85 318.2 218 75.2
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 5.3e-85 318.2 213 73.7
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 6.9e-85 317.8 211 76.3
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 6.9e-85 317.8 211 76.3
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 6.9e-85 317.8 226 69.5
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 4.5e-84 315.1 229 66.4
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 2.9e-83 312.4 203 76.8
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 2.9e-83 312.4 202 76.7
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 8.4e-83 310.8 207 73.9
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 1.1e-82 310.5 206 74.3
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.4e-82 310.1 215 72.1
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.4e-82 310.1 206 74.3
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.2e-81 307.0 207 74.9
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.2e-81 307.0 218 70.6
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.6e-81 306.6 214 70.6
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.6e-81 305.1 231 67.1
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 2.3e-80 302.8 231 67.5
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.1e-79 300.4 203 71.9
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.9e-79 299.7 205 72.2
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 9.7e-79 297.4 216 72.2
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.8e-78 295.8 211 71.1
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.8e-78 295.8 230 66.1
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 6.3e-78 294.7 204 73.0
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.4e-77 292.7 223 67.3
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 5.3e-77 291.6 236 65.7
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 9.0e-77 290.8 199 72.4
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 4.5e-76 288.5 238 64.7
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.1e-74 283.9 231 64.5
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.2e-73 280.4 211 65.9
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.2e-73 280.4 213 67.6
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.1e-73 279.6 236 61.0
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.1e-73 279.6 219 64.4
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 2.7e-73 279.3 225 64.9
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 2.7e-73 279.3 225 64.9
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 6.1e-73 278.1 201 69.2
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 6.1e-73 278.1 201 69.2
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.4e-72 276.9 193 73.1
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.8e-72 276.6 225 64.0
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.8e-72 276.6 214 66.4
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 2.3e-72 276.2 210 67.6
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.3e-72 276.2 225 64.0
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 2.3e-72 276.2 225 64.0
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 3.9e-72 275.4 225 64.0
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 5.1e-72 275.0 228 64.9
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 5.1e-72 275.0 193 72.5
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 1.5e-71 273.5 210 67.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 9.7e-71 270.8 210 67.1
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 9.7e-71 270.8 219 62.6
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.3e-70 270.4 227 63.0
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-70 270.4 227 63.0
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.3e-70 270.4 227 63.0
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.2e-70 269.6 230 62.6
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 6.3e-70 268.1 230 62.6
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.8e-69 266.5 228 66.2
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 5.3e-69 265.0 204 67.2
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 2.6e-68 262.7 200 67.5
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.0e-67 260.8 231 60.6
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 6.5e-67 258.1 221 60.6
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 6.5e-67 258.1 222 60.4
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 8.5e-67 257.7 217 65.0
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.4e-66 256.9 210 61.4
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 4.2e-66 255.4 202 61.9
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 3.0e-64 249.2 142 81.7
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 2.0e-63 246.5 215 59.5
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 8.0e-57 224.6 187 62.0
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.8e-56 223.4 212 53.3
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 3.3e-55 219.2 194 61.3
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 8.2e-54 214.5 216 56.9
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.4e-53 213.8 171 64.3
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 7.2e-50 201.4 120 81.7
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 2.0e-47 193.4 104 91.3
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 2.4e-45 186.4 120 70.0
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.2e-44 184.1 208 51.4
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 7.7e-44 181.4 130 71.5
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 3.6e-41 172.6 108 71.3
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 3.0e-40 169.5 101 78.2
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 5.6e-18 95.5 62 71.0
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 9.5e-18 94.7 60 70.0


User provided reference genes

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