Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 0.0e+00 1436.0 722 100.0
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 0.0e+00 1273.5 699 93.6
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 0.0e+00 1160.6 718 79.9
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 0.0e+00 1116.3 733 77.8
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 0.0e+00 1114.8 700 79.6
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1113.2 715 76.5
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1104.7 728 75.1
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 0.0e+00 1101.7 730 75.9
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 0.0e+00 1101.3 718 77.0
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 0.0e+00 1093.6 719 76.5
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 0.0e+00 1092.0 739 73.9
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 0.0e+00 1090.9 699 77.1
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 0.0e+00 1089.3 722 75.1
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 0.0e+00 1088.2 729 74.5
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 0.0e+00 1085.5 738 74.4
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 0.0e+00 1083.9 747 74.2
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 0.0e+00 1083.6 722 75.1
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 0.0e+00 1083.2 729 74.1
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 0.0e+00 1082.0 718 75.1
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1080.9 749 72.6
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 7.4e-311 1070.1 724 73.9
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.3e-310 1069.3 801 68.5
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 7.3e-306 1053.5 719 73.4
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.2e-305 1052.7 725 73.7
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 4.0e-304 1047.7 702 73.9
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 4.4e-303 1044.3 716 72.3
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 7.5e-303 1043.5 712 73.0
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 8.3e-302 1040.0 708 72.9
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 8.3e-302 1040.0 700 73.6
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.1e-301 1037.7 700 74.0
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 5.4e-301 1037.3 725 71.6
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 3.0e-299 1031.6 721 72.0
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 6.6e-299 1030.4 700 73.9
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.4e-296 1022.7 723 70.0
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.4e-296 1021.9 719 71.8
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 3.1e-296 1021.5 700 72.6
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 2.0e-295 1018.8 704 73.0
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 2.9e-294 1015.0 721 70.9
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 2.9e-294 1015.0 699 72.1
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 2.9e-294 1015.0 723 70.0
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 8.4e-294 1013.4 729 70.1
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.4e-293 1012.7 722 69.9
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 3.2e-293 1011.5 728 69.9
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.6e-292 1009.2 722 71.1
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.7e-292 1008.4 722 69.9
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 2.7e-292 1008.4 699 71.5
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.0e-291 1006.5 721 69.3
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.3e-291 1006.1 702 73.2
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.3e-291 1006.1 700 72.1
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 3.0e-291 1005.0 725 69.5
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.6e-290 1000.7 706 71.1
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.4e-288 995.3 699 71.4
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.1e-288 995.0 704 71.3
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 9.0e-288 993.4 726 70.9
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.5e-287 992.6 683 73.9
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 7.6e-287 990.3 726 69.8
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 3.8e-286 988.0 705 69.6
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 8.4e-286 986.9 707 69.9
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.1e-285 986.5 707 69.9
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.6e-284 982.6 700 69.3
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 3.5e-284 981.5 716 67.9
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 4.6e-284 981.1 754 67.8
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 6.0e-284 980.7 700 69.1
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 7.8e-284 980.3 706 68.7
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 5.1e-283 977.6 717 69.0
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 6.9e-280 967.2 712 69.5
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 2.6e-279 965.3 706 70.1
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 5.8e-279 964.1 700 68.1
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.9e-278 961.8 722 67.3
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.9e-277 959.1 707 68.9
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 3.9e-275 951.4 715 66.7
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 5.1e-275 951.0 717 66.9
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 8.7e-275 950.3 716 67.2
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 8.7e-275 950.3 716 66.9
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.5e-274 949.5 700 67.4
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 3.3e-274 948.3 707 67.9
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.3e-273 946.4 721 66.9
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 2.1e-273 945.7 703 67.3
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 4.8e-273 944.5 633 74.1
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 6.2e-273 944.1 678 71.1
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 6.2e-273 944.1 715 66.0
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 9.0e-272 940.3 704 66.6
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 4.5e-271 937.9 716 66.3
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.3e-270 936.4 708 66.1
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 2.2e-270 935.6 714 66.0
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 2.2e-270 935.6 682 68.3
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 8.4e-270 933.7 716 65.5
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 9.3e-269 930.2 723 65.3
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 1.9e-266 922.5 725 65.4
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.3e-265 919.8 700 66.3
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 6.2e-265 917.5 702 66.5
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 8.2e-265 917.1 716 65.1
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 6.9e-264 914.1 702 66.2
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 1.5e-263 912.9 702 66.2
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.0e-263 912.5 708 66.0
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 1.3e-262 909.8 725 65.1
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.3e-262 909.8 655 71.1
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 1.7e-262 909.4 700 66.1
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 7.1e-261 904.0 701 65.5
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.2e-260 903.3 724 65.2
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 4.6e-260 901.4 706 65.4
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 2.5e-258 895.6 644 70.8
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 4.1e-256 888.3 717 62.8
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.6e-255 885.6 708 62.9
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 2.9e-254 882.1 707 64.1
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.0e-251 872.1 708 63.6
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.9e-250 869.4 720 63.6
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.3e-249 866.7 707 62.1
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.7e-246 856.3 613 72.4
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.7e-246 856.3 719 61.2
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.1e-245 853.6 707 61.2
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.7e-238 829.7 725 60.7
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 3.3e-234 815.5 713 61.4
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 5.7e-234 814.7 642 67.0
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.1e-232 810.4 717 61.2
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.9e-230 802.4 555 74.2
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.9e-229 799.7 719 59.4
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 3.0e-227 792.3 549 72.9
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 6.7e-227 791.2 720 57.1
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.3e-226 788.9 720 56.7
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.2e-221 771.2 607 66.7
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.1e-216 757.3 617 65.3
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 3.8e-214 748.8 701 58.1
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-213 747.3 561 69.2
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 3.3e-205 719.2 715 55.4
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.2e-200 702.6 574 63.2
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 5.6e-197 691.8 670 55.2
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 2.1e-196 689.9 705 52.9
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.2e-194 684.1 505 68.9
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 7.1e-176 621.7 709 48.9
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 5.5e-152 542.3 598 50.7
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.4e-145 518.5 338 75.4
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 2.5e-144 516.9 892 38.2
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 8.0e-119 432.2 437 55.8
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.0e-118 430.3 267 79.0
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.3e-116 424.9 258 80.6
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.4e-94 351.7 495 42.4
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 2.0e-93 347.8 369 50.9
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.1e-80 305.4 323 51.7
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.1e-62 245.7 546 35.2
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.6e-55 221.9 283 45.6
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 6.4e-52 209.9 189 58.7
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.6e-48 196.8 140 67.9
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.3e-41 175.6 137 66.4
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.9e-40 171.8 131 67.2
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.5e-37 162.2 327 35.5
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.6e-34 152.1 364 33.0
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 1.5e-32 145.6 129 55.8
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 3.3e-32 144.4 177 47.5
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 4.8e-31 140.6 167 49.1
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 5.3e-30 137.1 121 57.0
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.1e-24 119.4 121 54.5
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.3e-23 115.9 321 30.8
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 4.8e-15 87.4 69 59.4
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 2.4e-14 85.1 88 48.9
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 3.1e-14 84.7 96 40.6
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-12 79.0 47 68.1
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-12 79.0 47 68.1
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 2.2e-12 78.6 58 62.1
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.9e-12 78.2 58 63.8
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.3e-09 68.6 37 86.5
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 4.4e-08 64.3 64 48.4


User provided reference genes

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