Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 3.0e-125 451.8 221 100.0
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 5.2e-61 238.4 236 55.5
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 7.5e-60 234.6 223 58.3
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.8e-59 232.6 179 59.8
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 7.0e-58 228.0 230 56.1
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 7.0e-58 228.0 227 56.4
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 7.7e-57 224.6 217 53.9
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.1e-54 216.5 229 54.6
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 3.6e-54 215.7 222 55.9
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 3.6e-54 215.7 222 56.8
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.0e-53 214.2 227 53.3
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.4e-53 213.8 215 51.6
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.8e-51 206.1 209 51.7
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 3.2e-47 192.6 230 50.0
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 7.2e-47 191.4 193 50.8
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 3.6e-46 189.1 219 48.4
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 2.0e-44 183.3 204 49.5
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 9.8e-44 181.0 146 64.4
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 8.3e-43 177.9 165 50.3
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 1.8e-42 176.8 164 49.4
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.2e-41 174.1 220 42.7
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.6e-41 173.7 192 47.9
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.0e-41 173.3 195 47.2
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 3.5e-41 172.6 196 46.9
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 4.5e-41 172.2 229 41.9
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 5.9e-41 171.8 212 42.9
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 1.0e-40 171.0 156 54.5
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 1.7e-40 170.2 163 50.3
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 2.3e-40 169.9 186 44.1
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.1e-39 167.5 189 48.7
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 1.1e-39 167.5 160 51.9
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.1e-39 167.5 160 51.9
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.5e-39 166.4 157 52.2
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.5e-39 166.4 160 51.2
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 3.3e-39 166.0 202 46.5
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 3.3e-39 166.0 195 46.2
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 1.2e-38 164.1 206 44.2
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 1.6e-38 163.7 227 40.5
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 4.7e-38 162.2 155 53.5
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 4.7e-38 162.2 153 52.3
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.0e-37 161.0 195 45.6
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 2.3e-37 159.8 249 38.2
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.3e-37 159.8 158 49.4
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 3.0e-37 159.5 158 50.6
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 4.0e-37 159.1 160 48.8
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 4.0e-37 159.1 160 48.8
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 6.8e-37 158.3 218 41.7
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 6.8e-37 158.3 218 41.7
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 6.8e-37 158.3 228 40.8
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 8.9e-37 157.9 155 49.0
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 8.9e-37 157.9 155 49.0
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 8.9e-37 157.9 187 43.9
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.2e-36 157.5 155 51.0
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.5e-36 157.1 158 51.9
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.5e-36 157.1 159 48.4
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.5e-36 157.1 168 48.2
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 2.0e-36 156.8 211 43.1
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 2.0e-36 156.8 154 51.9
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 2.0e-36 156.8 170 48.2
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 7.5e-36 154.8 169 49.1
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.5e-36 154.8 153 50.3
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 7.5e-36 154.8 153 49.7
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 7.5e-36 154.8 152 50.0
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.7e-35 153.7 150 52.7
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.7e-35 153.7 159 49.1
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.7e-35 153.7 153 49.7
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.9e-35 152.9 156 48.7
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 3.7e-35 152.5 160 48.8
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 4.9e-35 152.1 165 46.1
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 6.4e-35 151.8 160 42.5
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.1e-34 151.0 150 49.3
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.1e-34 151.0 160 46.9
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.4e-34 150.6 168 42.3
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.4e-34 150.6 158 44.9
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-34 150.6 158 44.9
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 1.4e-34 150.6 161 48.4
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.4e-34 150.6 171 43.9
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.8e-34 150.2 167 40.1
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.8e-34 150.2 163 42.9
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.4e-34 149.8 163 46.0
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.4e-34 149.8 170 41.2
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 3.2e-34 149.4 177 42.4
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 3.2e-34 149.4 177 42.4
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.2e-34 149.4 153 49.0
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 4.1e-34 149.1 159 45.3
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.2e-33 147.5 179 43.0
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 5.9e-33 145.2 158 44.9
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 5.9e-33 145.2 155 46.5
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 7.8e-33 144.8 158 40.5
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.3e-32 144.1 158 44.3
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 1.7e-32 143.7 156 47.4
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 3.9e-32 142.5 157 43.3
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.6e-32 141.7 171 41.5
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.9e-31 140.2 173 38.2
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 2.5e-31 139.8 157 45.2
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 5.6e-31 138.7 183 42.6
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.6e-30 136.0 166 44.0
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 3.6e-30 136.0 167 40.7
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.6e-30 136.0 218 34.4
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.7e-30 135.6 202 37.6
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.7e-30 135.6 202 37.6
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 6.2e-30 135.2 156 53.2
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.0e-29 134.4 158 38.6
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.3e-29 133.3 160 44.4
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 3.1e-29 132.9 142 47.9
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 3.1e-29 132.9 163 41.1
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 4.0e-29 132.5 167 43.1
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.2e-29 132.1 171 43.9
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 6.8e-29 131.7 216 37.5
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 8.9e-29 131.3 159 36.5
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.2e-28 131.0 165 43.6
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.0e-28 130.2 207 32.4
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.0e-28 130.2 211 37.9
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 2.6e-28 129.8 197 33.0
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 2.6e-28 129.8 197 33.0
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.6e-28 129.8 200 33.5
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.4e-28 129.4 165 43.0
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 4.4e-28 129.0 218 36.7
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 5.8e-28 128.6 177 40.7
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 9.8e-28 127.9 175 40.6
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.3e-27 127.5 209 32.1
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 2.9e-27 126.3 178 37.1
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 3.7e-27 125.9 211 39.3
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.4e-27 125.2 156 44.2
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 2.4e-26 123.2 191 40.8
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 4.1e-26 122.5 216 37.0
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.4e-26 122.1 127 44.9
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 9.2e-26 121.3 190 38.4
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 9.2e-26 121.3 153 45.1
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 1.2e-25 120.9 218 36.7
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 1.2e-25 120.9 181 37.0
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.6e-25 120.6 237 35.9
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.6e-25 120.6 231 35.1
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.7e-25 119.8 127 44.1
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 3.5e-25 119.4 122 49.2
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 6.0e-25 118.6 170 39.4
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.0e-24 117.9 127 44.1
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.3e-24 117.5 157 43.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.3e-24 117.5 215 40.0
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 2.3e-24 116.7 160 39.4
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 3.0e-24 116.3 163 36.8
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 3.9e-24 115.9 229 35.8
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 5.0e-24 115.5 170 39.4
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 6.6e-24 115.2 178 41.0
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 8.6e-24 114.8 156 42.3
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.5e-23 114.0 153 38.6
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-22 110.9 89 61.8
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 8.1e-22 108.2 161 40.4
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 6.4e-19 98.6 149 37.6
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 8.3e-19 98.2 153 34.0
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 8.3e-19 98.2 163 34.4
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 9.2e-18 94.7 178 32.6
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 7.8e-17 91.7 125 41.6
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.9e-16 89.4 121 38.8
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.9e-15 87.0 180 31.7
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 4.3e-15 85.9 162 30.2
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 9.5e-15 84.7 186 34.4
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.6e-14 84.0 177 31.1
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.8e-13 80.5 171 32.7
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.2e-12 77.8 64 57.8
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 7.6e-12 75.1 78 43.6
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.1e-10 71.2 153 32.7
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.1e-10 71.2 117 36.8
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 4.1e-10 69.3 71 45.1
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 7.3e-07 58.5 72 41.7


User provided reference genes

Program Settings