Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 2454.9 1339 100.0
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1460.3 1447 61.6
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1402.1 1433 59.9
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1392.5 1465 58.2
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1370.1 1602 54.2
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1349.0 1420 55.6
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1281.2 1601 50.3
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1268.1 1476 53.0
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1265.4 1466 52.9
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1248.4 1476 49.9
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1247.3 1445 52.5
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1245.3 1570 51.4
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1219.5 1558 51.5
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1213.7 1432 53.4
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1209.9 1447 48.6
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1206.4 1454 52.1
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1198.7 1438 54.3
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1198.3 1422 49.9
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1182.9 1509 50.7
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1177.2 1504 49.4
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1167.1 1572 46.1
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1163.3 1545 47.0
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1155.2 1508 47.3
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1154.8 1365 53.4
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 0.0e+00 1151.3 910 68.4
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1150.6 1562 48.7
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1146.3 1442 50.7
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1135.6 1466 48.5
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1135.6 1431 49.5
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1128.6 1372 50.3
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1128.2 1386 48.6
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1122.8 1446 50.3
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1120.9 1439 50.9
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1120.5 1406 48.2
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1118.6 1440 50.7
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1116.3 1446 50.3
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1114.8 1476 49.5
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1114.0 1386 48.1
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 0.0e+00 1112.8 1338 49.6
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1110.9 1446 50.0
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1104.7 1592 46.6
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1101.7 1485 47.2
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1100.1 1525 47.6
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1093.6 1564 47.2
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1092.8 1475 48.5
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1089.7 1447 45.1
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1089.7 1448 45.0
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1087.8 1381 51.5
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1087.4 1563 47.1
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1085.9 1339 52.0
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1082.4 1514 47.2
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1081.6 1427 49.9
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1076.2 1541 46.8
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1075.8 1439 45.4
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 1.5e-309 1066.6 1418 48.9
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 2.2e-308 1062.8 1542 46.4
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 1.4e-307 1060.1 1360 47.2
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 7.9e-306 1054.3 1361 49.3
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 1.0e-305 1053.9 1358 48.7
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.1e-302 1043.9 1400 49.6
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 1.5e-301 1040.0 1421 48.3
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 6.5e-300 1034.6 1349 50.2
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 2.5e-299 1032.7 1570 42.5
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 2.5e-299 1032.7 1406 47.6
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 3.2e-299 1032.3 1351 49.8
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 1.0e-297 1027.3 1384 47.0
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 3.3e-296 1022.3 1525 45.7
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 4.4e-296 1021.9 1500 45.4
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 7.4e-296 1021.1 917 60.2
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 2.0e-293 1013.1 1410 46.1
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 3.5e-293 1012.3 1421 46.9
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 1.7e-292 1010.0 1591 44.1
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 2.9e-292 1009.2 1383 48.5
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 3.8e-292 1008.8 1402 46.1
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 1.1e-291 1007.3 1487 47.7
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 1.4e-289 1000.3 1489 46.9
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.0e-289 998.8 1793 41.2
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 1.1e-286 990.7 1363 47.8
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 1.8e-286 989.9 1355 45.6
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 3.5e-285 985.7 1566 45.1
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.2e-277 960.7 1392 48.9
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.1e-267 927.5 1491 45.5
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 4.3e-267 925.6 1393 46.9
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 6.1e-266 921.8 1443 43.5
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 3.6e-258 896.0 1533 42.9
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.6e-253 880.6 1294 46.8
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 2.0e-253 880.2 907 53.9
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 2.7e-253 879.8 1203 46.9
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.7e-253 879.8 750 62.9
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 4.7e-242 842.4 1365 45.3
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 1.7e-228 797.3 1360 41.0
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 1.3e-223 781.2 751 56.7
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 1.1e-211 741.5 1340 36.5
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 1.2e-200 704.9 2352 30.7
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 8.5e-199 698.7 1134 39.9
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.8e-177 627.9 1320 35.8
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 1.6e-173 614.8 545 59.4
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.8e-172 611.3 709 48.7
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 1.8e-156 558.1 1453 31.6
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 9.2e-153 545.8 729 43.9
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 8.1e-133 479.6 1172 36.2
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 7.5e-131 473.0 896 38.7
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 8.3e-130 469.5 1315 30.0
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 9.2e-129 466.1 557 49.7
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 2.2e-122 444.9 442 57.2
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 6.7e-103 380.2 1476 27.5
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 3.3e-102 377.9 332 63.6
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 2.4e-100 371.7 1488 30.2
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 9.0e-100 369.8 344 58.4
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 4.2e-97 360.9 726 34.6
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 2.1e-96 358.6 341 59.2
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.0e-95 354.8 493 41.4
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 3.4e-91 341.3 1450 28.6
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 3.2e-81 308.1 337 52.2
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.2e-81 307.8 344 52.3
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.7e-79 300.4 321 48.3
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 8.8e-79 300.1 429 45.2
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.2e-72 279.6 280 57.9
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.5e-57 229.6 757 28.8
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 8.0e-56 223.8 154 72.7
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.2e-48 199.9 152 70.4
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.6e-48 198.4 317 40.4
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 1.2e-46 193.4 128 76.6
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 7.0e-44 184.1 261 44.8
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.3e-42 179.9 232 42.7
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 5.5e-41 174.5 155 63.2
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-38 164.5 648 25.9
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.4e-31 143.3 213 42.3
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 4.9e-29 134.8 412 27.7
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.0e-27 129.4 639 24.7
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 8.0e-24 117.5 99 58.6
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 4.0e-23 115.2 141 45.4
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 2.0e-22 112.8 181 39.2
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 4.9e-21 108.2 366 27.0
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 2.7e-19 102.4 75 65.3
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 3.4e-14 85.5 224 30.4
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 6.6e-10 71.2 160 39.4
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.5e-09 70.1 81 51.9
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 1.6e-08 66.6 53 58.5
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 2.8e-08 65.9 56 57.1
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 3.6e-08 65.5 48 60.4


User provided reference genes

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