Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu063887.1 Olea europaea HOM05D002124 ORTHO05D013513 9.1e-40 166.4 81 100.0
Dinv14966 Davidia involucrata HOM05D002124 ORTHO05D004058 3.7e-17 91.3 87 55.2
Ciclev10008126m.g Citrus clementina HOM05D002124 ORTHO05D004058 8.3e-17 90.1 76 59.2
Gorai.009G372800 Gossypium raimondii HOM05D002124 ORTHO05D004058 3.2e-16 88.2 87 54.0
Cc02_g32740 Coffea canephora HOM05D002124 ORTHO05D004058 7.0e-16 87.0 87 54.0
Hma1.2p1_0416F.1_g148650 Hydrangea macrophylla HOM05D002124 ORTHO05D004058 7.0e-16 87.0 87 51.7
Atru.chr2.2249 Acer truncatum HOM05D002124 ORTHO05D004058 9.2e-16 86.7 87 51.7
Gohir.D05G344800 Gossypium hirsutum HOM05D002124 ORTHO05D004058 9.2e-16 86.7 87 52.9
Nitab4.5_0004648g0010 Nicotiana tabacum HOM05D002124 ORTHO05D004058 9.2e-16 86.7 87 50.6
Eucgr.F03250 Eucalyptus grandis HOM05D002124 ORTHO05D004058 1.6e-15 85.9 87 50.6
Gohir.A04G038200 Gossypium hirsutum HOM05D002124 ORTHO05D004058 1.6e-15 85.9 87 52.9
Nitab4.5_0000035g0020 Nicotiana tabacum HOM05D002124 ORTHO05D004058 1.6e-15 85.9 87 50.6
MD11G1259200 Malus domestica HOM05D002124 ORTHO05D004058 2.7e-15 85.1 87 51.7
Sabra11G0092100 Salix brachista HOM05D002124 ORTHO05D013513 3.5e-15 84.7 87 50.6
Potri.011G097000 Populus trichocarpa HOM05D002124 ORTHO05D004058 4.6e-15 84.3 87 50.6
COL.COLO4_17610 Corchorus olitorius HOM05D002124 ORTHO05D004058 6.0e-15 84.0 87 51.7
Manes.15G091700 Manihot esculenta HOM05D002124 ORTHO05D004058 1.0e-14 83.2 87 50.6
Peaxi162Scf01503g00003 Petunia axillaris HOM05D002124 ORTHO05D004058 1.7e-14 82.4 87 48.3
CSS0015091 Camellia sinensis var. sinensis HOM05D002124 ORTHO05D004058 2.3e-14 82.0 76 56.6
Prupe.4G170700 Prunus persica HOM05D002124 ORTHO05D004058 6.6e-14 80.5 87 50.6
Thecc.07G104600 Theobroma cacao HOM05D002124 ORTHO05D004058 6.6e-14 80.5 87 49.4
FvH4_3g18700 Fragaria vesca HOM05D002124 ORTHO05D004058 1.5e-13 79.3 87 51.7
FAN11G1105 Fragaria x ananassa HOM05D002124 ORTHO05D004058 1.5e-13 79.3 87 51.7
FAN21G0287 Fragaria x ananassa HOM05D002124 ORTHO05D004058 1.5e-13 79.3 87 51.7
FAN25G2358 Fragaria x ananassa HOM05D002124 ORTHO05D004058 1.5e-13 79.3 87 51.7
DCAR_013142 Daucus carota HOM05D002124 ORTHO05D004058 1.9e-13 79.0 87 47.1
vmacro11908 Vaccinium macrocarpon HOM05D002124 ORTHO05D004058 1.9e-13 79.0 87 49.4
FAN16G0365 Fragaria x ananassa HOM05D002124 ORTHO05D004058 3.3e-13 78.2 87 50.6
Rhsim06G0205000 Rhododendron simsii HOM05D002124 ORTHO05D004058 3.3e-13 78.2 87 49.4
PGR031G3852 Punica granatum HOM05D002124 ORTHO05D004058 4.3e-13 77.8 87 47.1
Nn1g09042 Nelumbo nucifera HOM05D002124 ORTHO05D004058 5.6e-13 77.4 87 49.4
QL08p026936 Quercus lobata HOM05D002124 ORTHO05D004058 5.6e-13 77.4 87 46.0
Actinidia12553 Actinidia chinensis HOM05D002124 ORTHO05D004058 9.5e-13 76.6 87 49.4
MBI07_g17044_MAGBIO Magnolia biondii HOM05D002124 ORTHO05D004058 9.5e-13 76.6 87 48.3
THA.LOC104812201 Tarenaya hassleriana HOM05D002124 ORTHO05D004058 9.5e-13 76.6 87 46.0
RcHm_v2.0_Chr5g0031511 Rosa chinensis HOM05D002124 ORTHO05D004058 1.2e-12 76.3 87 49.4
Thhalv10019571m.g Eutrema salsugineum HOM05D002124 ORTHO05D004058 2.8e-12 75.1 87 43.7
Sp5g28120 Schrenkiella parvula HOM05D002124 ORTHO05D004058 2.8e-12 75.1 87 43.7
CARHR066130 Cardamine hirsuta HOM05D002124 ORTHO05D004058 3.6e-12 74.7 87 43.7
Rhsim06G0205100 Rhododendron simsii HOM05D002124 ORTHO05D013513 4.7e-12 74.3 87 48.3
BraA07t30634Z Brassica rapa HOM05D002124 ORTHO05D004058 6.2e-12 73.9 87 43.7
Aqoxy4G00481 Aquilegia oxysepala HOM05D002124 ORTHO05D004058 1.1e-11 73.2 87 48.3
A07p29960 Brassica napus HOM05D002124 ORTHO05D004058 1.1e-11 73.2 87 43.7
BcaC08g45669 Brassica carinata HOM05D002124 ORTHO05D004058 1.8e-11 72.4 87 42.5
BolC6t38543H Brassica oleracea HOM05D002124 ORTHO05D004058 1.8e-11 72.4 87 42.5
BolC6t38545H Brassica oleracea HOM05D002124 ORTHO05D004058 1.8e-11 72.4 87 42.5
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 2.3e-11 72.0 87 42.5
C06p34220 Brassica napus HOM05D002124 ORTHO05D004058 2.3e-11 72.0 87 42.5
C06p34260 Brassica napus HOM05D002124 ORTHO05D004058 4.0e-11 71.2 87 42.5
Carub.0002s1993 Capsella rubella HOM05D002124 ORTHO05D004058 4.0e-11 71.2 87 40.2
Aa31LG4G3430 Aethionema arabicum HOM05D002124 ORTHO05D004058 2.0e-10 68.9 87 40.2
PSO063G1324 Papaver somniferum HOM05D002124 ORTHO05D004058 2.6e-10 68.6 87 47.1
MBI06_g26006_MAGBIO Magnolia biondii HOM05D002124 ORTHO05D004058 3.4e-10 68.2 88 45.5
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 4.4e-10 67.8 87 41.4
PSO782G3776 Papaver somniferum HOM05D002124 ORTHO05D004058 4.4e-10 67.8 87 47.1
Gohir.A12G200200 Gossypium hirsutum HOM05D002124 ORTHO05D004058 1.7e-09 65.9 88 44.3
Medtr8g071900 Medicago truncatula HOM05D002124 ORTHO05D004058 1.7e-09 65.9 88 48.9
Glyma.16G075500 Glycine max HOM05D002124 ORTHO05D004058 3.7e-09 64.7 88 44.3
COL.COLO4_16717 Corchorus olitorius HOM05D002124 ORTHO05D004058 4.9e-09 64.3 88 43.2
Glyma.09G216200 Glycine max HOM05D002124 ORTHO05D004058 4.9e-09 64.3 78 47.4
Gorai.008G217900 Gossypium raimondii HOM05D002124 ORTHO05D004058 4.9e-09 64.3 88 43.2
Gohir.D12G202900 Gossypium hirsutum HOM05D002124 ORTHO05D004058 6.4e-09 63.9 88 43.2
HanXRQChr07g0198451 Helianthus annuus HOM05D002124 ORTHO05D004058 6.4e-09 63.9 78 48.7
Manes.15G187500 Manihot esculenta HOM05D002124 ORTHO05D004058 6.4e-09 63.9 88 42.0
Psat4g109880 Pisum sativum HOM05D002124 ORTHO05D004058 6.4e-09 63.9 88 47.7
TWI60G0219 Tripterygium wilfordii HOM05D002124 ORTHO05D004058 6.4e-09 63.9 88 43.2
TAR626G1255 Trochodendron aralioides HOM05D002124 ORTHO05D004058 6.4e-09 63.9 88 44.3
CANSAT21G2221 Cannabis sativa HOM05D002124 ORTHO05D004058 8.3e-09 63.5 88 40.9
ECA233G1423 Erigeron canadensis HOM05D002124 ORTHO05D004058 8.3e-09 63.5 88 46.6
Phvul.003G277200 Phaseolus vulgaris HOM05D002124 ORTHO05D004058 8.3e-09 63.5 88 43.2
Cpa.g.sc305.3 Carica papaya HOM05D002124 ORTHO05D004058 1.1e-08 63.2 78 44.9
Prupe.5G099100 Prunus persica HOM05D002124 ORTHO05D004058 1.1e-08 63.2 88 46.6
VMungo0251G2067 Vigna mungo HOM05D002124 ORTHO05D004058 1.1e-08 63.2 88 43.2
VMungo1215G0973 Vigna mungo HOM05D002124 ORTHO05D004058 1.1e-08 63.2 78 47.4
Ca_25073_v3 Cicer arietinum L. HOM05D002124 ORTHO05D004058 1.4e-08 62.8 88 45.5
Eucgr.E01172 Eucalyptus grandis HOM05D002124 ORTHO05D004058 1.4e-08 62.8 88 44.3
Phvul.002G124600 Phaseolus vulgaris HOM05D002124 ORTHO05D004058 1.4e-08 62.8 78 47.4
TPR.G23171 Trifolium pratense HOM05D002124 ORTHO05D004058 1.4e-08 62.8 88 45.5
Cc00_g01210 Coffea canephora HOM05D002124 ORTHO05D004058 1.9e-08 62.4 88 44.3
Prupe.5G016500 Prunus persica HOM05D002124 ORTHO05D004058 1.9e-08 62.4 88 44.3
GSVIVG01036921001 Vitis vinifera HOM05D002124 ORTHO05D004058 1.9e-08 62.4 88 42.0
ATR0602G193 Amborella trichopoda HOM05D002124 ORTHO05D004058 2.4e-08 62.0 87 41.4
Glyma.01G151200 Glycine max HOM05D002124 ORTHO05D004058 2.4e-08 62.0 78 46.2
HanXRQChr08g0226801 Helianthus annuus HOM05D002124 ORTHO05D004058 2.4e-08 62.0 88 43.2
RcHm_v2.0_Chr7g0214801 Rosa chinensis HOM05D002124 ORTHO05D004058 2.4e-08 62.0 88 42.0
Duzib205G1217 Durio zibethinus HOM05D002124 ORTHO05D004058 3.2e-08 61.6 88 42.0
Lj2g0012989 Lotus japonicus HOM05D002124 ORTHO05D004058 3.2e-08 61.6 89 42.7
Lj4g0001277 Lotus japonicus HOM05D002124 ORTHO05D004058 3.2e-08 61.6 88 43.2
Lalb_Chr09g0325151 Lupinus albus HOM05D002124 ORTHO05D004058 3.2e-08 61.6 78 46.2
MD16G1288000 Malus domestica HOM05D002124 ORTHO05D004058 3.2e-08 61.6 88 43.2
Peaxi162Scf00157g00141 Petunia axillaris HOM05D002124 ORTHO05D004058 3.2e-08 61.6 88 44.3
Thecc.03G323200 Theobroma cacao HOM05D002124 ORTHO05D004058 3.2e-08 61.6 88 42.0
TPR.G16808 Trifolium pratense HOM05D002124 ORTHO05D004058 3.2e-08 61.6 88 46.6
GSVIVG01036920001 Vitis vinifera HOM05D002124 ORTHO05D004058 3.2e-08 61.6 88 42.0
Cc00_g01190 Coffea canephora HOM05D002124 ORTHO05D004058 4.1e-08 61.2 88 44.3
FAN04G2536 Fragaria x ananassa HOM05D002124 ORTHO05D004058 4.1e-08 61.2 88 40.9
MSTRG.1748 Avicennia marina HOM05D002124 ORTHO05D004058 5.4e-08 60.8 88 40.9
FvH4_5g24400 Fragaria vesca HOM05D002124 ORTHO05D004058 5.4e-08 60.8 88 40.9
FAN13G0809 Fragaria x ananassa HOM05D002124 ORTHO05D004058 5.4e-08 60.8 88 40.9
FAN18G0454 Fragaria x ananassa HOM05D002124 ORTHO05D004058 5.4e-08 60.8 88 40.9
Lj8P379T14 Lonicera japonica HOM05D002124 ORTHO05D004058 5.4e-08 60.8 88 42.0
Medtr5g026360 Medicago truncatula HOM05D002124 ORTHO05D004058 5.4e-08 60.8 88 44.3
ECA233G3110 Erigeron canadensis HOM05D002124 ORTHO05D004058 7.1e-08 60.5 88 45.5
MD06G1022000 Malus domestica HOM05D002124 ORTHO05D004058 7.1e-08 60.5 88 42.0
Nitab4.5_0000183g0020 Nicotiana tabacum HOM05D002124 ORTHO05D004058 7.1e-08 60.5 88 42.0
Sed0014597 Sechium edule HOM05D002124 ORTHO05D004058 7.1e-08 60.5 88 42.0
Nitab4.5_0004181g0030 Nicotiana tabacum HOM05D002124 ORTHO05D004058 9.2e-08 60.1 88 40.9
Os01g0653200 Oryza sativa ssp. japonica HOM05D002124 ORTHO05D004058 9.2e-08 60.1 88 39.8
Psat2g143920 Pisum sativum HOM05D002124 ORTHO05D004058 9.2e-08 60.1 88 43.2
CAN.G22.11 Capsicum annuum HOM05D002124 ORTHO05D004058 1.6e-07 59.3 88 42.0
QL12p002232 Quercus lobata HOM05D002124 ORTHO05D004058 1.6e-07 59.3 78 42.3
Solyc08g074970.1 Solanum lycopersicum HOM05D002124 ORTHO05D004058 1.6e-07 59.3 88 45.5
Zm00001eb158150 Zea mays HOM05D002124 ORTHO05D004058 1.6e-07 59.3 88 39.8
Oeu002023.1 Olea europaea HOM05D002124 ORTHO05D004058 2.1e-07 58.9 88 42.0
Rhsim11G0041400 Rhododendron simsii HOM05D002124 ORTHO05D004058 2.1e-07 58.9 88 42.0
RhsimUnG0103500 Rhododendron simsii HOM05D002124 ORTHO05D004058 2.1e-07 58.9 88 42.0
TAR629G0346 Trochodendron aralioides HOM05D002124 ORTHO05D004058 2.1e-07 58.9 78 46.2
Ca_22474_v3 Cicer arietinum L. HOM05D002124 ORTHO05D004058 2.7e-07 58.5 78 44.9
DCAR_030954 Daucus carota HOM05D002124 ORTHO05D004058 2.7e-07 58.5 88 43.2
Glyma.16G106900 Glycine max HOM05D002124 ORTHO05D004058 2.7e-07 58.5 78 44.9
PSO063G4285 Papaver somniferum HOM05D002124 ORTHO05D004058 2.7e-07 58.5 88 39.8
Potri.003G105500 Populus trichocarpa HOM05D002124 ORTHO05D004058 2.7e-07 58.5 88 39.8
Rhsim11G0041700 Rhododendron simsii HOM05D002124 ORTHO05D004058 2.7e-07 58.5 88 42.0
AagrBONN_evm.TU.Sc2ySwM_362.2846 Anthoceros agrestis HOM05D002124 ORTHO05D004058 4.6e-07 57.8 88 40.9
Cfa012644 Carpinus fangiana HOM05D002124 ORTHO05D004058 4.6e-07 57.8 88 40.9
Lsat_1_v5_gn_6_17480 Lactuca sativa HOM05D002124 ORTHO05D004058 4.6e-07 57.8 78 43.6
Mapoly0151s0028 Marchantia polymorpha HOM05D002124 ORTHO05D004058 4.6e-07 57.8 88 39.8
Oeu030855.1 Olea europaea HOM05D002124 ORTHO05D013513 4.6e-07 57.8 88 39.8
Sabra03G0072600 Salix brachista HOM05D002124 ORTHO05D004058 4.6e-07 57.8 88 40.9
SalBow8G1322 Salvia bowleyana HOM05D002124 ORTHO05D004058 4.6e-07 57.8 88 42.0
SalBow8G3196 Salvia bowleyana HOM05D002124 ORTHO05D004058 4.6e-07 57.8 88 42.0
PGSC0003DMG400015709 Solanum tuberosum HOM05D002124 ORTHO05D004058 4.6e-07 57.8 88 42.0
Atru.chr6.2123 Acer truncatum HOM05D002124 ORTHO05D004058 6.0e-07 57.4 85 41.2
FAN08G2266 Fragaria x ananassa HOM05D002124 ORTHO05D004058 6.0e-07 57.4 88 39.8
Lalb_Chr05g0215301 Lupinus albus HOM05D002124 ORTHO05D004058 6.0e-07 57.4 88 40.9
Potri.001G128300 Populus trichocarpa HOM05D002124 ORTHO05D004058 7.8e-07 57.0 88 39.8
Aqoxy2G00653 Aquilegia oxysepala HOM05D002124 ORTHO05D004058 1.0e-06 56.6 88 39.8
ClCG07G011250 Citrullus lanatus HOM05D002124 ORTHO05D004058 1.0e-06 56.6 78 42.3
Haze_08016 Corylus avellana HOM05D002124 ORTHO05D004058 1.0e-06 56.6 76 42.1
Oeu030856.1 Olea europaea HOM05D002124 ORTHO05D004058 1.0e-06 56.6 88 39.8
GSVIVG01036924001 Vitis vinifera HOM05D002124 ORTHO05D004058 1.0e-06 56.6 78 42.3
arahy.Tifrunner.gnm1.ann1.8AJM88 Arachis hypogaea HOM05D002124 ORTHO05D004058 1.3e-06 56.2 78 43.6
arahy.Tifrunner.gnm1.ann1.B47NWK Arachis hypogaea HOM05D002124 ORTHO05D004058 1.3e-06 56.2 78 43.6
Carub.0008s1988 Capsella rubella HOM05D002124 ORTHO05D009549 1.3e-06 56.2 63 49.2
CiPaw.11G076000 Carya illinoinensis HOM05D002124 ORTHO05D004058 1.3e-06 56.2 88 37.5
MELO3C016245.2 Cucumis melo HOM05D002124 ORTHO05D004058 1.3e-06 56.2 78 42.3
CsaV3_4G007000 Cucumis sativus L. HOM05D002124 ORTHO05D004058 1.3e-06 56.2 78 42.3
Migut.E01389 Erythranthe guttata HOM05D002124 ORTHO05D004058 1.3e-06 56.2 88 39.8
Pp3c4_27520 Physcomitrium patens HOM05D002124 ORTHO05D004058 1.3e-06 56.2 78 44.9
Actinidia01230 Actinidia chinensis HOM05D002124 ORTHO05D004058 1.7e-06 55.8 88 38.6
CiPaw.12G054000 Carya illinoinensis HOM05D002124 ORTHO05D004058 1.7e-06 55.8 88 38.6
PSO782G5345 Papaver somniferum HOM05D002124 ORTHO05D004058 1.7e-06 55.8 88 37.5
Sopen08g023580 Solanum pennellii HOM05D002124 ORTHO05D004058 1.7e-06 55.8 88 43.2
THA.LOC104811306 Tarenaya hassleriana HOM05D002124 ORTHO05D004058 1.7e-06 55.8 87 39.1
Mapoly0108s0023 Marchantia polymorpha HOM05D002124 ORTHO05D004058 2.3e-06 55.5 78 42.3
BcaB05g22487 Brassica carinata HOM05D002124 ORTHO05D009549 3.0e-06 55.1 63 52.4
BcaB05g22544 Brassica carinata HOM05D002124 ORTHO05D013513 3.0e-06 55.1 64 50.0
BcaC03g14032 Brassica carinata HOM05D002124 ORTHO05D009549 3.9e-06 54.7 63 50.8
C02p12710 Brassica napus HOM05D002124 ORTHO05D009549 3.9e-06 54.7 63 50.8
BolC2t07369H Brassica oleracea HOM05D002124 ORTHO05D009549 3.9e-06 54.7 63 50.8
Ciclev10003490m.g Citrus clementina HOM05D002124 ORTHO05D004058 3.9e-06 54.7 88 38.6
Thhalv10013459m.g Eutrema salsugineum HOM05D002124 ORTHO05D009549 3.9e-06 54.7 54 53.7
Oeu016795.1 Olea europaea HOM05D002124 ORTHO05D013513 3.9e-06 54.7 76 40.8
HPP92_024029 Vanilla planifolia HOM05D002124 ORTHO05D004058 3.9e-06 54.7 88 37.5
A02p07290 Brassica napus HOM05D002124 ORTHO05D009549 5.1e-06 54.3 63 50.8
BraA02t05809Z Brassica rapa HOM05D002124 ORTHO05D009549 5.1e-06 54.3 63 50.8
Sp6g20910 Schrenkiella parvula HOM05D002124 ORTHO05D009549 5.1e-06 54.3 63 50.8
BolC7t45541H Brassica oleracea HOM05D002124 ORTHO05D004058 6.6e-06 53.9 78 38.5
Pp3c26_15370 Physcomitrium patens HOM05D002124 ORTHO05D004058 6.6e-06 53.9 78 43.6
Aa31LG1G11760 Aethionema arabicum HOM05D002124 ORTHO05D009549 8.6e-06 53.5 70 42.9
AT5G59070 Arabidopsis thaliana HOM05D002124 ORTHO05D009549 8.6e-06 53.5 63 47.6
vmacro00117 Vaccinium macrocarpon HOM05D002124 ORTHO05D004058 8.6e-06 53.5 85 40.0


User provided reference genes

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