Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 5.0e-57 224.2 110 100.0
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.4e-46 189.5 111 85.6
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.2e-28 129.0 96 67.7
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.2e-27 125.2 99 65.7
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 7.1e-27 124.0 99 64.6
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 6.0e-26 120.9 103 62.1
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 3.9e-25 118.2 111 63.1
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 4.3e-24 114.8 122 57.4
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 5.6e-24 114.4 96 59.4
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.6e-23 112.8 101 60.4
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.6e-23 112.8 111 60.4
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.1e-23 112.5 116 55.2
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 8.1e-23 110.5 116 55.2
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 1.1e-22 110.2 105 61.0
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.4e-22 109.0 116 53.4
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.4e-22 109.0 116 53.4
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.0e-22 108.2 100 55.0
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 7.6e-21 104.0 118 50.8
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.7e-20 102.8 92 54.3
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.7e-20 102.8 125 48.8
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.9e-20 101.3 95 56.8
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 8.4e-20 100.5 114 51.8
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.1e-19 100.1 117 49.6
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 5.4e-19 97.8 106 51.9
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 7.1e-19 97.4 110 54.5
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 7.1e-19 97.4 100 53.0
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 3.5e-18 95.1 95 54.7
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 4.6e-18 94.7 89 57.3
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 6.0e-18 94.4 104 48.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 6.0e-18 94.4 92 55.4
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.3e-17 93.2 100 52.0
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 1.7e-17 92.8 110 48.2
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 2.3e-17 92.4 83 57.8
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 3.9e-17 91.7 109 49.5
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 3.9e-17 91.7 85 56.5
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 5.1e-17 91.3 91 56.0
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 8.7e-17 90.5 104 49.0
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 8.7e-17 90.5 102 52.9
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.1e-16 90.1 92 57.6
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.1e-16 90.1 104 47.1
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.9e-16 89.4 109 52.3
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.9e-16 89.4 108 49.1
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.9e-16 89.4 108 49.1
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.5e-16 89.0 108 49.1
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 2.5e-16 89.0 83 56.6
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 4.3e-16 88.2 86 54.7
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 7.3e-16 87.4 86 53.5
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 9.6e-16 87.0 109 55.0
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 9.6e-16 87.0 109 55.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.2e-15 86.7 106 51.9
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 1.6e-15 86.3 104 45.2
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 2.1e-15 85.9 89 50.6
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 2.1e-15 85.9 99 47.5
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.1e-15 85.9 119 49.6
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 2.1e-15 85.9 97 49.5
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.1e-15 85.9 100 47.0
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 3.6e-15 85.1 114 50.9
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.6e-15 85.1 104 45.2
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 3.6e-15 85.1 100 52.0
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 4.7e-15 84.7 101 54.5
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 4.7e-15 84.7 93 49.5
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 4.7e-15 84.7 96 47.9
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 4.7e-15 84.7 107 43.9
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 6.2e-15 84.3 91 56.0
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.2e-15 84.3 79 53.2
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 8.1e-15 84.0 122 48.4
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 8.1e-15 84.0 101 47.5
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.1e-15 84.0 107 49.5
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 1.1e-14 83.6 116 43.1
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.4e-14 83.2 87 51.7
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.4e-14 82.4 107 47.7
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.4e-14 82.4 99 45.5
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 3.1e-14 82.0 108 50.0
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.1e-14 82.0 93 53.8
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 3.1e-14 82.0 96 44.8
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 4.0e-14 81.6 100 49.0
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.2e-14 81.3 99 44.4
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 5.2e-14 81.3 110 48.2
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.2e-14 81.3 92 51.1
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 5.2e-14 81.3 92 51.1
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.2e-13 80.1 91 50.5
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.5e-13 79.7 106 47.2
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.5e-13 79.7 96 50.0
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.0e-13 79.3 87 50.6
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-13 79.0 106 41.5
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.6e-13 79.0 87 49.4
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 3.4e-13 78.6 91 49.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.4e-13 78.6 106 44.3
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.4e-13 78.6 106 41.5
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 3.4e-13 78.6 81 51.9
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.4e-13 78.2 110 45.5
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 5.8e-13 77.8 104 42.3
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 7.6e-13 77.4 104 41.3
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 7.6e-13 77.4 104 42.3
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 7.6e-13 77.4 104 47.1
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 7.6e-13 77.4 90 43.3
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 9.9e-13 77.0 107 43.0
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 9.9e-13 77.0 113 46.9
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 9.9e-13 77.0 92 52.2
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.3e-12 76.6 88 52.3
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 2.2e-12 75.9 104 41.3
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 2.2e-12 75.9 104 41.3
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 2.2e-12 75.9 104 41.3
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.9e-12 75.5 101 42.6
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.9e-12 75.5 102 48.0
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 3.8e-12 75.1 92 47.8
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 6.4e-12 74.3 87 43.7
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.4e-12 74.3 92 45.7
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.1e-11 73.6 104 43.3
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 1.1e-11 73.6 108 48.1
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-11 73.2 99 43.4
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-11 73.2 99 43.4
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.4e-11 72.4 100 39.0
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.4e-11 72.4 103 41.7
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.4e-11 72.4 92 50.0
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.2e-11 72.0 103 41.7
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.2e-11 72.0 91 47.3
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 5.4e-11 71.2 98 42.9
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 9.3e-11 70.5 103 44.7
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.2e-10 70.1 98 42.9
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 1.2e-10 70.1 88 46.6
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.2e-10 70.1 99 47.5
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.6e-10 69.7 95 46.3
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.1e-10 69.3 95 49.5
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 2.1e-10 69.3 125 42.4
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 2.7e-10 68.9 77 46.8
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 3.5e-10 68.6 90 46.7
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.6e-10 68.2 125 39.2
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.6e-10 68.2 125 39.2
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 6.0e-10 67.8 89 50.6
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 6.0e-10 67.8 107 39.3
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.0e-10 67.8 103 38.8
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 1.0e-09 67.0 104 46.2
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.0e-09 67.0 90 45.6
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 1.0e-09 67.0 90 46.7
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.0e-09 67.0 95 48.4
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.3e-09 66.6 82 52.4
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.3e-09 66.6 113 43.4
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.3e-09 65.9 79 54.4
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 2.3e-09 65.9 66 53.0
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.0e-09 65.5 98 45.9
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.9e-09 65.1 82 51.2
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 6.6e-09 64.3 89 48.3
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 6.6e-09 64.3 104 43.3
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 8.7e-09 63.9 90 45.6
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.1e-08 63.5 82 50.0
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.5e-08 63.2 126 42.1
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.5e-08 62.4 90 43.3
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.5e-08 62.4 104 42.3
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 3.3e-08 62.0 90 43.3
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 3.3e-08 62.0 81 45.7
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 4.3e-08 61.6 97 44.3
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 4.3e-08 61.6 82 48.8
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 5.6e-08 61.2 82 45.1
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 5.6e-08 61.2 82 48.8
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 5.6e-08 61.2 82 45.1
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 9.6e-08 60.5 82 47.6
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 9.6e-08 60.5 96 49.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.6e-08 60.5 85 47.1
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.6e-08 60.5 85 47.1
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-07 60.1 84 46.4
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-07 60.1 84 46.4
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.6e-07 59.7 97 44.3
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 2.1e-07 59.3 92 39.1
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 2.8e-07 58.9 89 42.7
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 3.6e-07 58.5 92 44.6
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.8e-07 58.2 89 43.8
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 6.2e-07 57.8 84 44.0
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 6.2e-07 57.8 101 39.6
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.4e-06 56.6 87 44.8
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.4e-06 56.6 96 43.8
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 1.4e-06 56.6 81 42.0


User provided reference genes

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