Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 7.1e-49 196.8 91 100.0
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 7.9e-32 140.2 98 68.4
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.1e-30 136.3 98 65.3
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 3.3e-30 134.8 98 63.3
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 4.3e-30 134.4 98 65.3
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 5.6e-30 134.0 98 66.3
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 1.3e-29 132.9 98 64.3
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.3e-29 132.9 98 64.3
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 1.3e-29 132.9 98 62.2
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 3.7e-29 131.3 98 63.3
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 3.7e-29 131.3 98 63.3
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 3.7e-29 131.3 98 63.3
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 4.8e-29 131.0 94 64.9
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 4.8e-29 131.0 98 62.2
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 6.2e-29 130.6 98 62.2
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 6.2e-29 130.6 98 63.3
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 1.4e-28 129.4 98 65.3
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.4e-28 128.6 94 62.8
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 3.1e-28 128.3 94 62.8
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 4.0e-28 127.9 98 62.2
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 5.3e-28 127.5 98 62.2
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 9.0e-28 126.7 98 62.2
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 1.2e-27 126.3 98 61.2
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.5e-27 125.9 98 61.2
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 1.5e-27 125.9 98 61.2
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 2.0e-27 125.6 95 60.0
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 3.4e-27 124.8 94 61.7
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 5.8e-27 124.0 94 61.7
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 5.8e-27 124.0 98 55.1
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 5.8e-27 124.0 98 61.2
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 5.8e-27 124.0 98 61.2
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 5.8e-27 124.0 98 60.2
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 7.6e-27 123.6 98 60.2
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 7.6e-27 123.6 98 60.2
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 7.6e-27 123.6 98 59.2
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.0e-26 123.2 94 62.8
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.3e-26 122.9 98 57.1
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.3e-26 122.9 98 60.2
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.7e-26 122.5 96 60.4
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 1.7e-26 122.5 94 59.6
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 2.2e-26 122.1 98 58.2
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.2e-26 122.1 94 60.6
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 2.2e-26 122.1 98 57.1
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 2.9e-26 121.7 98 59.2
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 2.9e-26 121.7 94 61.7
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 2.9e-26 121.7 94 61.7
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 2.9e-26 121.7 91 60.4
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 3.8e-26 121.3 96 61.5
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 3.8e-26 121.3 98 60.2
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 4.9e-26 120.9 100 60.0
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 4.9e-26 120.9 100 60.0
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.9e-26 120.9 98 57.1
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.9e-26 120.9 98 57.1
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 4.9e-26 120.9 98 59.2
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 6.5e-26 120.6 91 60.4
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 6.5e-26 120.6 99 57.6
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 6.5e-26 120.6 94 58.5
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 8.4e-26 120.2 94 59.6
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 8.4e-26 120.2 98 57.1
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 8.4e-26 120.2 98 57.1
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 8.4e-26 120.2 98 58.2
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 1.1e-25 119.8 94 57.4
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 1.1e-25 119.8 94 57.4
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 1.4e-25 119.4 98 56.1
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.4e-25 119.4 94 58.5
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 1.4e-25 119.4 96 60.4
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.4e-25 119.4 98 59.2
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.9e-25 119.0 98 55.1
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 1.9e-25 119.0 98 57.1
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 2.5e-25 118.6 98 56.1
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 3.2e-25 118.2 91 60.4
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 3.2e-25 118.2 99 56.6
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 3.2e-25 118.2 94 59.6
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 4.2e-25 117.9 94 59.6
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 5.5e-25 117.5 94 57.4
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 5.5e-25 117.5 99 56.6
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 7.1e-25 117.1 98 58.2
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 7.1e-25 117.1 94 58.5
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 7.1e-25 117.1 101 57.4
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 1.2e-24 116.3 96 59.4
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.6e-24 115.9 97 55.7
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 1.6e-24 115.9 98 57.1
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 2.1e-24 115.5 97 55.7
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.1e-24 115.5 97 55.7
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 2.1e-24 115.5 99 56.6
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 2.1e-24 115.5 99 56.6
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 3.5e-24 114.8 94 61.7
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 3.5e-24 114.8 94 56.4
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 4.6e-24 114.4 100 56.0
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 6.0e-24 114.0 94 58.5
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 6.0e-24 114.0 94 58.5
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.5e-22 109.4 98 51.0
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 2.5e-22 108.6 98 53.1
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 7.4e-22 107.1 100 48.0
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.3e-21 106.3 96 52.1
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 6.3e-21 104.0 108 50.9
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 1.1e-20 103.2 98 53.1
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 9.0e-20 100.1 102 52.9
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 9.0e-20 100.1 104 50.0
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.2e-19 99.8 95 49.5
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 2.0e-19 99.0 104 49.0
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 2.0e-19 99.0 101 51.5
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 2.6e-19 98.6 104 51.9
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.6e-19 98.6 95 50.5
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 2.6e-19 98.6 103 49.5
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 3.4e-19 98.2 100 53.0
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.3e-18 96.3 104 51.0
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 1.3e-18 96.3 104 51.0
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 2.9e-18 95.1 105 47.6
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 3.8e-18 94.7 102 50.0
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.8e-18 94.7 89 48.3
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 8.5e-18 93.6 95 53.7
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.4e-17 92.8 71 59.2
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.9e-17 92.4 95 47.4
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.5e-17 92.0 92 50.0
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.2e-17 91.3 100 47.0
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.5e-17 90.9 100 47.0
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 7.2e-17 90.5 85 52.9
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-16 89.0 95 44.2
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 2.1e-16 89.0 76 57.9
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 5.1e-15 84.3 73 47.9
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 9.1e-12 73.6 46 71.7
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.6e-11 72.0 50 66.0
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.0e-10 70.1 50 64.0
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 2.7e-08 62.0 38 65.8
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 7.9e-08 60.5 38 63.2
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 6.7e-07 57.4 86 37.2


User provided reference genes

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