Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 6.7e-207 723.8 366 100.0
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 6.7e-207 723.8 366 100.0
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.1e-164 583.6 384 78.9
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.2e-115 420.6 372 63.7
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 3.0e-114 416.0 375 61.6
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.5e-108 396.4 380 58.9
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 4.8e-104 382.1 376 57.4
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.1e-103 380.9 384 59.1
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 7.6e-102 374.8 376 57.2
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 2.9e-101 372.9 380 58.2
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.4e-100 370.5 381 58.8
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.2e-100 369.4 383 56.1
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.2e-100 369.4 383 56.1
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 4.6e-99 365.5 383 56.1
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 4.6e-99 365.5 383 56.4
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.3e-97 359.4 386 54.4
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.2e-96 356.7 377 57.8
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.4e-94 349.4 379 56.5
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.4e-94 349.4 373 53.6
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.9e-93 346.3 375 54.1
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.0e-93 345.5 374 55.1
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.2e-92 342.4 375 53.1
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 7.9e-91 338.2 335 60.0
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.8e-90 337.0 382 52.1
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 2.3e-90 336.7 382 52.1
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 8.8e-90 334.7 366 54.4
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 4.4e-89 332.4 366 53.8
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.1e-87 325.9 363 54.3
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.2e-86 324.3 383 50.4
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 2.0e-86 323.6 392 50.5
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.6e-86 323.2 386 50.8
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 2.2e-85 320.1 379 53.0
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 3.0e-82 309.7 412 47.3
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 6.7e-82 308.5 376 50.5
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 1.5e-81 307.4 389 49.9
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.0e-81 307.0 377 50.1
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.0e-81 307.0 394 49.2
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 5.7e-81 305.4 371 49.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 3.7e-80 302.8 387 48.1
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.3e-80 302.0 382 50.5
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 9.1e-79 298.1 362 50.8
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 2.0e-78 297.0 379 48.8
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.7e-78 295.0 389 48.3
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.2e-77 293.5 370 49.5
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.5e-76 290.8 380 48.2
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 9.4e-76 288.1 400 45.5
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 2.1e-75 287.0 312 54.5
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 4.7e-75 285.8 412 43.4
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 1.8e-74 283.9 374 50.0
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 5.2e-74 282.3 418 42.8
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 4.4e-73 279.3 372 46.2
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 9.7e-73 278.1 382 47.4
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.7e-72 277.3 388 47.4
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.2e-72 276.9 383 47.3
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 2.2e-72 276.9 424 42.2
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 2.8e-72 276.6 406 45.6
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 6.3e-72 275.4 368 45.4
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 8.2e-72 275.0 382 45.8
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.8e-71 273.9 414 45.4
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 2.4e-71 273.5 415 42.2
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 4.1e-71 272.7 416 43.0
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 2.0e-70 270.4 367 46.3
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 4.5e-70 269.2 392 45.9
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 7.7e-70 268.5 380 46.6
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.0e-69 268.1 415 42.4
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.3e-69 267.7 410 43.4
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.9e-68 263.8 380 44.7
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.6e-67 260.8 383 43.1
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 8.0e-67 258.5 380 46.1
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.0e-66 258.1 382 44.2
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.3e-66 256.9 329 48.3
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 3.0e-66 256.5 383 42.6
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 6.8e-66 255.4 381 43.3
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 2.0e-65 253.8 380 43.2
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.7e-65 252.3 399 42.1
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 3.7e-64 249.6 417 42.2
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 8.3e-64 248.4 381 43.6
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.1e-63 248.1 373 44.2
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.4e-63 246.9 403 41.4
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.1e-63 246.5 402 40.3
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 7.0e-63 245.4 422 41.9
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 9.1e-63 245.0 385 42.6
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.9e-62 242.3 377 43.5
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.2e-61 240.4 377 44.0
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.8e-61 239.6 385 42.9
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.1e-60 238.0 324 46.6
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.1e-60 238.0 268 50.4
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 2.3e-58 230.3 405 40.5
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.5e-57 227.6 402 40.8
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 6.3e-56 222.2 402 39.6
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 8.3e-56 221.9 373 40.5
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.8e-55 220.7 406 39.4
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.8e-55 220.7 373 39.7
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 2.4e-55 220.3 403 39.0
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 2.4e-55 220.3 403 39.0
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 4.1e-55 219.5 402 38.8
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 5.4e-55 219.2 402 38.8
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.6e-54 217.6 387 43.2
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.6e-54 217.6 404 39.9
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.6e-54 217.6 398 40.2
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 7.8e-54 215.3 400 40.8
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 8.6e-53 211.8 320 45.0
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.9e-52 210.7 372 39.5
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 3.3e-52 209.9 404 38.1
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 4.3e-52 209.5 402 38.1
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 4.3e-52 209.5 274 47.4
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 8.9e-50 201.8 409 38.9
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 9.8e-49 198.4 409 35.0
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.4e-47 194.5 387 39.0
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.4e-47 194.5 369 37.7
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 4.6e-46 189.5 287 43.6
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 7.8e-46 188.7 258 48.4
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 3.0e-45 186.8 411 37.7
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 3.0e-45 186.8 411 37.7
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 3.6e-43 179.9 406 37.7
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 8.0e-43 178.7 406 37.9
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 6.8e-42 175.6 406 37.9
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.2e-41 174.9 236 44.1
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.2e-41 174.9 243 45.7
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 3.4e-41 173.3 196 52.0
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 4.4e-41 172.9 249 43.0
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.7e-40 171.0 245 42.0
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 9.2e-39 165.2 235 41.7
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 9.2e-39 165.2 237 41.4
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 2.0e-38 164.1 197 47.2
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.0e-38 164.1 272 41.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 2.0e-38 164.1 407 34.6
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 3.5e-38 163.3 243 42.0
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 4.6e-38 162.9 386 35.8
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.0e-37 160.2 329 40.7
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 6.6e-37 159.1 247 40.9
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 8.6e-37 158.7 249 41.8
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 8.6e-37 158.7 247 41.3
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 3.3e-36 156.8 499 31.1
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 4.7e-35 152.9 236 40.3
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 6.2e-35 152.5 245 40.8
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 3.1e-34 150.2 408 33.3
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 5.2e-34 149.4 235 45.1
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.8e-34 149.1 246 39.4
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 6.8e-34 149.1 332 36.1
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.5e-33 147.9 244 38.1
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 1.7e-32 144.4 256 40.2
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 2.2e-32 144.1 234 39.7
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.9e-32 143.7 246 39.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 6.4e-32 142.5 239 37.2
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-31 141.7 257 37.4
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.4e-31 141.4 239 38.5
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.4e-31 141.4 213 39.0
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 7.1e-31 139.0 201 42.3
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.2e-30 138.3 249 40.6
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.6e-30 137.9 243 36.2
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.0e-29 135.2 242 38.0
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 3.9e-29 133.3 211 40.3
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 5.1e-29 132.9 381 29.9
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 7.3e-28 129.0 251 35.9
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 9.2e-23 112.1 153 51.6
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.6e-22 111.3 192 40.6
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 6.0e-22 109.4 160 39.4
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 6.6e-21 105.9 147 51.0
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.2e-18 96.3 222 39.6
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 8.9e-18 95.5 123 48.0
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.9e-18 95.5 138 39.9
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.9e-18 95.5 143 35.7
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 9.9e-17 92.0 175 34.9
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 9.9e-17 92.0 175 34.9
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.0e-14 82.8 130 36.9
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.3e-11 75.1 49 65.3
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 1.2e-09 68.6 179 34.6
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 2.9e-08 63.9 114 41.2
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 6.4e-08 62.8 52 51.9
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 4.2e-07 60.1 406 26.4
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 5.4e-07 59.7 122 36.1


User provided reference genes

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