Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 1.0e-114 416.8 217 100.0
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.0e-78 296.2 222 72.1
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.0e-78 296.2 222 72.1
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 1.0e-77 293.9 227 72.7
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 5.0e-77 291.6 228 71.5
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 8.6e-77 290.8 223 72.2
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 1.9e-76 289.7 227 70.5
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 5.8e-73 278.1 218 71.1
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 3.7e-72 275.4 221 67.9
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 8.3e-72 274.2 217 70.5
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 1.1e-71 273.9 217 71.0
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 4.1e-71 271.9 222 71.2
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 1.6e-70 270.0 233 65.7
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 2.7e-70 269.2 230 66.5
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 2.7e-70 269.2 220 69.1
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.7e-70 269.2 220 69.1
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 4.6e-70 268.5 221 67.4
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 6.0e-70 268.1 215 69.8
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.3e-69 266.9 220 69.1
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 1.7e-69 266.5 233 64.8
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 2.3e-69 266.2 222 68.5
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 3.0e-69 265.8 222 68.5
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 6.6e-69 264.6 220 68.6
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 1.1e-68 263.8 203 71.9
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 9.5e-68 260.8 185 77.8
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 9.5e-68 260.8 213 70.9
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 1.6e-67 260.0 225 68.4
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 2.1e-67 259.6 204 70.6
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 8.1e-67 257.7 229 66.8
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 8.1e-67 257.7 224 67.9
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 1.4e-66 256.9 218 67.4
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 1.4e-66 256.9 182 75.8
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 4.0e-66 255.4 185 73.5
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 4.0e-66 255.4 225 67.6
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 5.2e-66 255.0 196 73.5
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 6.8e-66 254.6 202 71.8
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 8.9e-66 254.2 225 66.2
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.2e-65 253.8 215 68.8
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 3.4e-65 252.3 218 66.1
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 3.4e-65 252.3 222 67.6
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 4.4e-65 251.9 216 67.1
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 4.4e-65 251.9 218 64.2
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 5.8e-65 251.5 215 68.4
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 9.9e-65 250.8 218 66.5
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.3e-64 250.4 165 79.4
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 1.3e-64 250.4 222 68.0
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 2.2e-64 249.6 219 67.6
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 4.9e-64 248.4 209 68.4
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 8.4e-64 247.7 212 67.9
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 1.4e-63 246.9 162 77.8
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 1.4e-63 246.9 233 63.1
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 1.9e-63 246.5 223 66.4
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 2.4e-63 246.1 207 66.7
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 2.4e-63 246.1 207 66.7
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 2.4e-63 246.1 207 66.7
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 7.1e-63 244.6 213 65.7
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 1.6e-62 243.4 214 66.4
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 1.6e-62 243.4 183 73.8
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 2.1e-62 243.0 219 64.8
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 2.7e-62 242.7 207 67.1
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 3.5e-62 242.3 180 73.9
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 4.6e-62 241.9 192 70.8
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 6.0e-62 241.5 209 67.0
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 6.0e-62 241.5 203 68.5
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 7.8e-62 241.1 201 69.2
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 1.3e-61 240.4 180 74.4
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 1.3e-61 240.4 178 74.2
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 3.0e-61 239.2 208 65.9
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 6.6e-61 238.0 198 66.7
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 8.6e-61 237.7 213 65.3
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 8.6e-61 237.7 215 65.6
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 2.5e-60 236.1 156 80.8
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 3.3e-60 235.7 229 61.1
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 5.6e-60 235.0 213 64.3
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 9.6e-60 234.2 151 82.1
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 9.6e-60 234.2 207 62.8
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 5.2e-58 228.4 148 80.4
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 1.2e-57 227.3 170 74.7
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 5.8e-57 224.9 241 58.5
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 7.6e-57 224.6 204 62.7
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 9.9e-57 224.2 178 70.2
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 4.6e-54 215.3 178 68.5
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 1.0e-53 214.2 178 68.0
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 1.3e-53 213.8 227 57.7
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 5.1e-53 211.8 176 65.9
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 9.6e-52 207.6 218 56.0
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 1.1e-47 194.1 207 56.5
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 2.4e-47 193.0 227 56.4
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 1.5e-44 183.7 150 65.3
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 4.3e-44 182.2 220 53.2
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 1.3e-40 170.6 107 84.1
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 1.9e-39 166.8 155 60.6
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 1.9e-39 166.8 166 57.8
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 4.2e-39 165.6 117 71.8
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 2.7e-38 162.9 175 53.1
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 3.5e-38 162.5 118 71.2
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 3.7e-27 125.9 82 80.5
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 2.4e-26 123.2 82 79.3
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 2.6e-25 119.8 104 65.4
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.7e-24 117.1 74 79.7
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 4.2e-23 112.5 178 38.2
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 2.3e-21 106.7 87 64.4
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 3.0e-21 106.3 79 72.2
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 2.2e-19 100.1 102 57.8
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 8.5e-16 88.2 58 75.9
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 1.4e-15 87.4 112 40.2
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 2.4e-10 70.1 111 38.7
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 6.9e-10 68.6 48 70.8
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 9.1e-10 68.2 46 73.9
Sc03g0008980 Simmondsia chinensis HOM05D007184 ORTHO05D008987 1.4e-07 60.8 43 69.8
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 1.9e-07 60.5 102 34.3
AagrBONN_evm.TU.Sc2ySwM_117.1655 Anthoceros agrestis HOM05D007184 ORTHO05D008987 6.1e-06 55.5 89 38.2


User provided reference genes

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