Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 2.2e-67 258.8 131 100.0
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 2.8e-30 135.6 133 57.9
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 4.8e-30 134.8 136 53.7
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 5.3e-29 131.3 133 54.9
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 6.9e-29 131.0 126 54.8
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 2.6e-28 129.0 129 54.3
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 2.6e-28 129.0 132 54.5
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 4.5e-28 128.3 136 52.9
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 4.5e-28 128.3 136 52.9
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 5.8e-28 127.9 124 55.6
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 5.8e-28 127.9 129 53.5
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 9.9e-28 127.1 133 49.6
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 1.3e-27 126.7 124 55.6
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 1.7e-27 126.3 129 53.5
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 2.2e-27 125.9 133 49.6
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 2.9e-27 125.6 129 51.9
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 2.9e-27 125.6 128 53.1
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 4.9e-27 124.8 133 51.9
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 6.4e-27 124.4 129 53.5
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 6.4e-27 124.4 128 50.8
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 8.4e-27 124.0 129 55.0
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.9e-26 122.9 135 49.6
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 3.2e-26 122.1 126 52.4
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 3.2e-26 122.1 133 51.9
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 3.2e-26 122.1 131 52.7
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 3.2e-26 122.1 123 52.8
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 3.2e-26 122.1 128 51.6
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 5.5e-26 121.3 134 48.5
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 7.1e-26 120.9 130 50.8
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 7.1e-26 120.9 130 50.8
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 9.3e-26 120.6 126 51.6
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 9.3e-26 120.6 126 51.6
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 9.3e-26 120.6 129 49.6
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.2e-25 120.2 131 49.6
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.6e-25 119.8 129 51.2
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.6e-25 119.8 133 51.9
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.6e-25 119.8 134 47.8
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.6e-25 119.8 129 52.7
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 2.1e-25 119.4 129 52.7
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 2.7e-25 119.0 136 50.7
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 3.5e-25 118.6 134 52.2
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 3.5e-25 118.6 130 48.5
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 3.5e-25 118.6 130 51.5
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 4.6e-25 118.2 127 52.0
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 6.0e-25 117.9 122 53.3
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 7.9e-25 117.5 129 49.6
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.3e-24 116.7 122 53.3
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.3e-24 116.7 134 50.0
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.3e-24 115.9 130 54.6
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 5.1e-24 114.8 129 51.2
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 8.7e-24 114.0 130 47.7
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 8.7e-24 114.0 126 50.8
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 1.5e-23 113.2 129 49.6
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.5e-23 113.2 132 50.8
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.3e-23 112.1 134 49.3
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 3.3e-23 112.1 134 49.3
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 3.3e-23 112.1 129 50.4
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 4.3e-23 111.7 135 45.9
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 4.3e-23 111.7 136 47.8
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 4.3e-23 111.7 124 50.0
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 5.6e-23 111.3 127 49.6
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 5.6e-23 111.3 134 49.3
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.6e-23 111.3 134 49.3
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 7.4e-23 110.9 124 50.0
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 7.4e-23 110.9 132 47.7
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 9.6e-23 110.5 132 46.2
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 9.6e-23 110.5 132 48.5
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 9.6e-23 110.5 129 50.4
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.3e-22 110.2 130 46.9
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.3e-22 110.2 130 48.5
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.6e-22 109.8 124 49.2
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.6e-22 109.8 124 48.4
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 2.1e-22 109.4 138 44.2
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 2.1e-22 109.4 132 46.2
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 2.1e-22 109.4 129 48.1
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 2.1e-22 109.4 132 49.2
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 2.8e-22 109.0 124 47.6
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 2.8e-22 109.0 133 48.1
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 3.7e-22 108.6 125 48.8
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 3.7e-22 108.6 135 45.2
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 6.2e-22 107.8 124 49.2
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 6.2e-22 107.8 124 50.0
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.1e-21 107.1 135 45.2
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.1e-21 107.1 131 46.6
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 1.4e-21 106.7 132 47.7
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 1.4e-21 106.7 125 47.2
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 1.8e-21 106.3 134 44.0
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 1.8e-21 106.3 121 47.1
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 1.8e-21 106.3 137 44.5
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.4e-21 105.9 78 65.4
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 2.4e-21 105.9 129 48.8
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 3.1e-21 105.5 121 47.1
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 9.0e-21 104.0 133 46.6
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.2e-20 103.6 134 44.0
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 1.2e-20 103.6 143 42.7
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 1.5e-20 103.2 78 67.9
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.5e-20 103.2 132 44.7
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.5e-20 103.2 134 43.3
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.0e-20 102.8 119 47.9
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.6e-20 102.4 120 47.5
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 2.6e-20 102.4 134 45.5
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 3.4e-20 102.1 129 45.0
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 5.8e-20 101.3 132 44.7
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 7.6e-20 100.9 132 47.0
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 1.0e-19 100.5 133 45.9
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 1.0e-19 100.5 127 44.9
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.3e-19 100.1 129 45.7
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 1.3e-19 100.1 126 46.8
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 2.9e-19 99.0 127 44.9
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.5e-18 95.9 136 43.4
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.2e-18 95.5 133 42.9
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 4.2e-18 95.1 128 45.3
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.6e-17 93.2 145 37.9
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.1e-17 92.8 136 41.2
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.1e-17 92.8 145 37.2
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 3.5e-17 92.0 135 42.2
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 6.0e-17 91.3 90 52.2
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.0e-16 90.5 149 38.3
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.0e-16 90.5 125 41.6
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 2.3e-16 89.4 129 40.3
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 3.9e-16 88.6 128 39.1
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.9e-16 88.6 121 40.5
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 5.1e-16 88.2 128 44.5
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.1e-15 87.0 78 59.0
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.5e-15 86.7 131 42.0
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 2.5e-15 85.9 76 53.9
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 7.4e-15 84.3 129 34.9
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 9.6e-15 84.0 130 40.0
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 1.3e-14 83.6 128 43.8
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 1.6e-14 83.2 118 39.0
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 6.3e-14 81.3 73 52.1
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 8.2e-14 80.9 126 35.7
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.8e-13 79.7 128 41.4
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 5.3e-13 78.2 94 44.7
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 6.9e-13 77.8 133 33.8
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 4.5e-12 75.1 79 50.6
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 5.9e-12 74.7 216 28.7
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 5.9e-12 74.7 78 44.9
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 6.1e-09 64.7 88 38.6
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.3e-08 63.5 93 40.9
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 3.0e-08 62.4 76 38.2
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 5.1e-08 61.6 96 35.4
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 5.1e-08 61.6 127 35.4
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 1.5e-07 60.1 93 35.5
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 2.5e-07 59.3 92 34.8
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 2.8e-06 55.8 89 40.4
AT1G34550 Arabidopsis thaliana HOM05D000499 ORTHO05D002825 8.2e-06 54.3 91 36.3


User provided reference genes

Program Settings