Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061778.1 Olea europaea HOM05D003360 ORTHO05D003759 8.4e-32 139.8 74 100.0
Solyc11g007100.1 Solanum lycopersicum HOM05D003360 ORTHO05D003759 2.1e-11 72.0 72 54.2
Sopen11g003020 Solanum pennellii HOM05D003360 ORTHO05D003759 2.1e-11 72.0 72 54.2
Nitab4.5_0001437g0150 Nicotiana tabacum HOM05D003360 ORTHO05D003759 3.7e-11 71.2 72 51.4
Manes.09G056502 Manihot esculenta HOM05D003360 ORTHO05D003759 4.0e-10 67.8 66 57.6
Psat3g033920 Pisum sativum HOM05D003360 ORTHO05D003759 4.0e-10 67.8 59 61.0
HPP92_000039 Vanilla planifolia HOM05D003360 ORTHO05D003759 6.9e-10 67.0 50 70.0
HPP92_012635 Vanilla planifolia HOM05D003360 ORTHO05D003759 6.9e-10 67.0 50 70.0
CiPaw.13G038600 Carya illinoinensis HOM05D003360 ORTHO05D003759 1.5e-09 65.9 46 71.7
EL10Ac7g16935 Beta vulgaris HOM05D003360 ORTHO05D003759 2.0e-09 65.5 51 64.7
Prupe.7G113000 Prunus persica HOM05D003360 ORTHO05D003759 2.0e-09 65.5 49 67.3
Sabra10G0185900 Salix brachista HOM05D001901 ORTHO05D001850 2.0e-09 65.5 58 60.3
Gohir.A09G138700 Gossypium hirsutum HOM05D003360 ORTHO05D003759 2.6e-09 65.1 58 58.6
Gorai.006G156000 Gossypium raimondii HOM05D003360 ORTHO05D003759 2.6e-09 65.1 58 58.6
Lalb_Chr21g0315791 Lupinus albus HOM05D003360 ORTHO05D003759 3.4e-09 64.7 72 52.8
Potri.010G237600 Populus trichocarpa HOM05D003360 ORTHO05D003759 3.4e-09 64.7 58 60.3
Lsat_1_v5_gn_2_104661 Lactuca sativa HOM05D001901 ORTHO05D001850 4.5e-09 64.3 72 52.8
Duzib093G2149 Durio zibethinus HOM05D003360 ORTHO05D003759 5.8e-09 63.9 77 51.9
Medtr7g104410 Medicago truncatula HOM05D003360 ORTHO05D003759 5.8e-09 63.9 59 61.0
PSO384G1242 Papaver somniferum HOM05D003360 ORTHO05D003759 5.8e-09 63.9 75 49.3
Ca_26655_v3 Cicer arietinum L. HOM05D003360 ORTHO05D003759 7.6e-09 63.5 51 62.7
MD12G1023500 Malus domestica HOM05D003360 ORTHO05D003759 7.6e-09 63.5 55 58.2
Potri.006G083201 Populus trichocarpa HOM05D003360 ORTHO05D003759 7.6e-09 63.5 60 60.0
GSVIVG01011278001 Vitis vinifera HOM05D003360 ORTHO05D003759 7.6e-09 63.5 76 48.7
arahy.Tifrunner.gnm1.ann1.3KS0IU Arachis hypogaea HOM05D003360 ORTHO05D003759 1.0e-08 63.2 49 63.3
arahy.Tifrunner.gnm1.ann1.W71F47 Arachis hypogaea HOM05D003360 ORTHO05D003759 1.0e-08 63.2 49 63.3
CiPaw.10G008200 Carya illinoinensis HOM05D003360 ORTHO05D003759 1.0e-08 63.2 59 55.9
Thecc.05G086800 Theobroma cacao HOM05D003360 ORTHO05D003759 1.0e-08 63.2 77 51.9
CANSAT80G2147 Cannabis sativa HOM05D003360 ORTHO05D003759 1.3e-08 62.8 60 58.3
Duzib128G1587 Durio zibethinus HOM05D003360 ORTHO05D003759 1.3e-08 62.8 74 50.0
Potri.008G021766 Populus trichocarpa HOM05D003360 ORTHO05D003759 1.3e-08 62.8 72 55.6
PGR004G2902 Punica granatum HOM05D003360 ORTHO05D003759 1.3e-08 62.8 55 56.4
ClCG10G019100 Citrullus lanatus HOM05D003360 ORTHO05D003759 1.7e-08 62.4 71 52.1
MELO3C009461.2 Cucumis melo HOM05D003360 ORTHO05D003759 1.7e-08 62.4 71 52.1
CsaV3_3G037150 Cucumis sativus L. HOM05D003360 ORTHO05D003759 1.7e-08 62.4 71 52.1
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.7e-08 62.4 74 50.0
Lj1g0000501 Lotus japonicus HOM05D003360 ORTHO05D003759 1.7e-08 62.4 58 56.9
MBI01_g47405_MAGBIO Magnolia biondii HOM05D003360 ORTHO05D003759 1.7e-08 62.4 74 52.7
Manes.08G024100 Manihot esculenta HOM05D003360 ORTHO05D003759 1.7e-08 62.4 72 50.0
TPR.G19518 Trifolium pratense HOM05D003360 ORTHO05D003759 1.7e-08 62.4 59 55.9
CSS0017316 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 2.2e-08 62.0 79 51.9
Cfa011263 Carpinus fangiana HOM05D003360 ORTHO05D003759 2.2e-08 62.0 72 52.8
Haze_02515 Corylus avellana HOM05D003360 ORTHO05D003759 2.2e-08 62.0 72 52.8
Nitab4.5_0003774g0050 Nicotiana tabacum HOM05D003360 ORTHO05D003759 2.2e-08 62.0 72 47.2
SHI23956 Sapria himalayana HOM05D003360 ORTHO05D003759 2.2e-08 62.0 61 57.4
Sed0007233 Sechium edule HOM05D003360 ORTHO05D003759 2.2e-08 62.0 59 57.6
TWI74G1584 Tripterygium wilfordii HOM05D003360 ORTHO05D003759 2.2e-08 62.0 61 54.1
Zm00001eb242710 Zea mays HOM05D003360 ORTHO05D003759 2.2e-08 62.0 50 62.0
CSS0011540 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 2.9e-08 61.6 66 50.0
Glyma.03G194300 Glycine max HOM05D003360 ORTHO05D003759 2.9e-08 61.6 66 53.0
Sed0011638 Sechium edule HOM05D003360 ORTHO05D003759 2.9e-08 61.6 71 49.3
TAR636G1359 Trochodendron aralioides HOM05D003360 ORTHO05D003759 2.9e-08 61.6 49 61.2
CSS0023349 Camellia sinensis var. sinensis HOM05D003360 ORTHO05D003759 3.8e-08 61.2 49 63.3
Ciclev10033849m.g Citrus clementina HOM05D003360 ORTHO05D003759 3.8e-08 61.2 72 48.6
Glyma.19G194100 Glycine max HOM05D003360 ORTHO05D003759 3.8e-08 61.2 66 53.0
DCAR_009156 Daucus carota HOM05D003360 ORTHO05D003759 4.9e-08 60.8 51 58.8
Eucgr.A01509 Eucalyptus grandis HOM05D003360 ORTHO05D003759 4.9e-08 60.8 70 51.4
Sopen09g004380 Solanum pennellii HOM05D003360 ORTHO05D003759 4.9e-08 60.8 46 63.0
PGSC0003DMG400002695 Solanum tuberosum HOM05D003360 ORTHO05D003759 4.9e-08 60.8 46 63.0
CiPaw.09G012500 Carya illinoinensis HOM05D003360 ORTHO05D003759 6.5e-08 60.5 59 54.2
COL.COLO4_29771 Corchorus olitorius HOM05D003360 ORTHO05D003759 6.5e-08 60.5 79 50.6
Glyma.10G071100 Glycine max HOM05D003360 ORTHO05D003759 6.5e-08 60.5 61 57.4
Gohir.A04G064385 Gossypium hirsutum HOM05D003360 ORTHO05D003759 6.5e-08 60.5 66 56.1
Sc20g0006220 Simmondsia chinensis HOM05D003360 ORTHO05D003759 6.5e-08 60.5 73 50.7
TAR633G1257 Trochodendron aralioides HOM05D003360 ORTHO05D003759 6.5e-08 60.5 75 52.0
Cpa.g.sc5.39 Carica papaya HOM05D003360 ORTHO05D003759 8.4e-08 60.1 77 48.1
Ciclev10013416m.g Citrus clementina HOM05D003360 ORTHO05D003759 8.4e-08 60.1 75 50.7
Eucgr.K02053 Eucalyptus grandis HOM05D003360 ORTHO05D003759 8.4e-08 60.1 82 43.9
Gohir.D04G100900 Gossypium hirsutum HOM05D003360 ORTHO05D003759 8.4e-08 60.1 66 54.5
Gorai.009G404100 Gossypium raimondii HOM05D003360 ORTHO05D003759 8.4e-08 60.1 66 54.5
Lj5g0024704 Lotus japonicus HOM05D003360 ORTHO05D003759 8.4e-08 60.1 60 53.3
Prupe.2G079600 Prunus persica HOM05D003360 ORTHO05D003759 8.4e-08 60.1 74 48.6
unitig_744.g24695 Utricularia gibba HOM05D003360 ORTHO05D003759 8.4e-08 60.1 45 66.7
HPP92_000004 Vanilla planifolia HOM05D003360 ORTHO05D003759 8.4e-08 60.1 66 51.5
BcaB06g28928 Brassica carinata HOM05D003360 ORTHO05D003759 1.1e-07 59.7 49 63.3
DCAR_003370 Daucus carota HOM05D003360 ORTHO05D003759 1.1e-07 59.7 67 52.2
ECA238G0205 Erigeron canadensis HOM05D003360 ORTHO05D003759 1.1e-07 59.7 61 49.2
Gohir.D01G196550 Gossypium hirsutum HOM05D003360 ORTHO05D003759 1.1e-07 59.7 67 49.3
Gorai.002G240800 Gossypium raimondii HOM05D003360 ORTHO05D003759 1.1e-07 59.7 67 49.3
Oeu009227.1 Olea europaea HOM05D003360 ORTHO05D003759 1.1e-07 59.7 72 50.0
RcHm_v2.0_Chr3g0472971 Rosa chinensis HOM05D003360 ORTHO05D003759 1.1e-07 59.7 59 54.2
unitig_749.g14295 Utricularia gibba HOM05D003360 ORTHO05D003759 1.1e-07 59.7 59 59.3
arahy.Tifrunner.gnm1.ann1.V8S7TV Arachis hypogaea HOM05D003360 ORTHO05D003759 1.4e-07 59.3 46 63.0
arahy.Tifrunner.gnm1.ann1.YCS2XP Arachis hypogaea HOM05D003360 ORTHO05D003759 1.4e-07 59.3 46 63.0
Carub.0004s1807 Capsella rubella HOM05D003360 ORTHO05D003759 1.4e-07 59.3 56 55.4
Migut.J01052 Erythranthe guttata HOM05D003360 ORTHO05D003759 1.4e-07 59.3 45 64.4
FvH4_6g18440 Fragaria vesca HOM05D003360 ORTHO05D003759 1.4e-07 59.3 65 50.8
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.4e-07 59.3 65 50.8
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 1.4e-07 59.3 65 50.8
Aqoxy2G01218 Aquilegia oxysepala HOM05D003360 ORTHO05D003759 1.9e-07 58.9 77 48.1
BcaC02g09220 Brassica carinata HOM05D003360 ORTHO05D003759 1.9e-07 58.9 48 60.4
C04p40170 Brassica napus HOM05D003360 ORTHO05D003759 1.9e-07 58.9 48 60.4
BolC4t25595H Brassica oleracea HOM05D003360 ORTHO05D003759 1.9e-07 58.9 48 60.4
Cfa016591 Carpinus fangiana HOM05D003360 ORTHO05D003759 1.9e-07 58.9 59 54.2
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 1.9e-07 58.9 62 51.6
Haze_19591 Corylus avellana HOM05D003360 ORTHO05D003759 1.9e-07 58.9 59 54.2
Thhalv10011130m.g Eutrema salsugineum HOM05D003360 ORTHO05D003759 1.9e-07 58.9 63 49.2
Nn6g34941 Nelumbo nucifera HOM05D003360 ORTHO05D003759 1.9e-07 58.9 65 55.4
SGA_v2.0_scaffold35G14071 Striga asiatica HOM05D001616 ORTHO05D003701 1.9e-07 58.9 57 54.4
AL4G32430 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 2.5e-07 58.5 49 61.2
BcaB02g09363 Brassica carinata HOM05D003360 ORTHO05D003759 2.5e-07 58.5 49 61.2
BcaC02g07614 Brassica carinata HOM05D003360 ORTHO05D003759 2.5e-07 58.5 49 61.2
BcaC02g07615 Brassica carinata HOM05D003360 ORTHO05D003759 2.5e-07 58.5 49 61.2
A04p27810 Brassica napus HOM05D003360 ORTHO05D003759 2.5e-07 58.5 49 61.2
Sp4g18540 Schrenkiella parvula HOM05D003360 ORTHO05D003759 2.5e-07 58.5 49 61.2
TAR623G1482 Trochodendron aralioides HOM05D003360 ORTHO05D003759 2.5e-07 58.5 76 47.4
A09p45850 Brassica napus HOM05D003360 ORTHO05D003759 3.2e-07 58.2 70 51.4
BraA09t40047Z Brassica rapa HOM05D003360 ORTHO05D003759 3.2e-07 58.2 70 51.4
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 3.2e-07 58.2 71 45.1
BcaC02g11743 Brassica carinata HOM05D003360 ORTHO05D003759 4.2e-07 57.8 47 63.8
A05p09550 Brassica napus HOM05D003360 ORTHO05D003759 4.2e-07 57.8 47 63.8
C04p11810 Brassica napus HOM05D003360 ORTHO05D003759 4.2e-07 57.8 47 63.8
BolC4t22830H Brassica oleracea HOM05D003360 ORTHO05D003759 4.2e-07 57.8 47 63.8
CAN.G397.29 Capsicum annuum HOM05D003360 ORTHO05D003759 4.2e-07 57.8 72 48.6
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 4.2e-07 57.8 49 59.2
Gohir.A01G207150 Gossypium hirsutum HOM05D003360 ORTHO05D003759 4.2e-07 57.8 67 49.3
MD14G1020700 Malus domestica HOM05D003360 ORTHO05D003759 4.2e-07 57.8 66 48.5
CARHR130590 Cardamine hirsuta HOM05D003360 ORTHO05D003759 5.5e-07 57.4 49 59.2
Nitab4.5_0002400g0080 Nicotiana tabacum HOM05D003360 ORTHO05D003759 5.5e-07 57.4 59 50.8
Peaxi162Scf00040g10112 Petunia axillaris HOM05D003360 ORTHO05D003759 5.5e-07 57.4 59 52.5
MSTRG.5836 Avicennia marina HOM05D003360 ORTHO05D003759 7.1e-07 57.0 63 50.8
BcaB01g00341 Brassica carinata HOM05D003360 ORTHO05D003759 7.1e-07 57.0 63 49.2
BcaB02g08554 Brassica carinata HOM05D003360 ORTHO05D003759 7.1e-07 57.0 48 58.3
BNapus_Darmor_BZH_scaffold_239p00010 Brassica napus HOM05D003360 ORTHO05D003759 7.1e-07 57.0 67 49.3
C04p65310 Brassica napus HOM05D003360 ORTHO05D003759 7.1e-07 57.0 67 49.3
BolC4t28009H Brassica oleracea HOM05D003360 ORTHO05D003759 7.1e-07 57.0 64 51.6
BraA04t18273Z Brassica rapa HOM05D003360 ORTHO05D003759 7.1e-07 57.0 67 49.3
Glyma.13G153018 Glycine max HOM05D003360 ORTHO05D003759 7.1e-07 57.0 66 50.0
Manes.10G058400 Manihot esculenta HOM05D003360 ORTHO05D003759 7.1e-07 57.0 43 62.8
Nitab4.5_0001725g0010 Nicotiana tabacum HOM05D003360 ORTHO05D003759 7.1e-07 57.0 71 46.5
Sp5g09560 Schrenkiella parvula HOM05D003360 ORTHO05D003759 7.1e-07 57.0 47 59.6
AL5G33550 Arabidopsis lyrata HOM05D003360 ORTHO05D003759 9.3e-07 56.6 49 57.1
BcaB01g00342 Brassica carinata HOM05D003360 ORTHO05D003759 9.3e-07 56.6 70 50.0
BcaC07g39642 Brassica carinata HOM05D003360 ORTHO05D003759 9.3e-07 56.6 70 50.0
BcaC08g44595 Brassica carinata HOM05D003360 ORTHO05D003759 9.3e-07 56.6 58 51.7
C06p20670 Brassica napus HOM05D003360 ORTHO05D003759 9.3e-07 56.6 58 51.7
C08p28060 Brassica napus HOM05D003360 ORTHO05D003759 9.3e-07 56.6 70 50.0
BolC6t37250H Brassica oleracea HOM05D003360 ORTHO05D003759 9.3e-07 56.6 58 51.7
BolC8t50417H Brassica oleracea HOM05D003360 ORTHO05D003759 9.3e-07 56.6 70 50.0
BraA05t19908Z Brassica rapa HOM05D003360 ORTHO05D003759 9.3e-07 56.6 47 61.7
Hma1.2p1_0232F.1_g097830 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 9.3e-07 56.6 51 56.9
Lsat_1_v5_gn_6_24141 Lactuca sativa HOM05D003360 ORTHO05D003759 9.3e-07 56.6 66 48.5
Os04g0411200 Oryza sativa ssp. japonica HOM05D003360 ORTHO05D003759 9.3e-07 56.6 49 57.1
Carub.0005s1925 Capsella rubella HOM05D003360 ORTHO05D003759 1.2e-06 56.2 63 49.2
Thhalv10017499m.g Eutrema salsugineum HOM05D003360 ORTHO05D003759 1.2e-06 56.2 63 47.6
A04p06710 Brassica napus HOM05D003360 ORTHO05D003759 1.6e-06 55.8 48 58.3
A07p21190 Brassica napus HOM05D003360 ORTHO05D003759 1.6e-06 55.8 67 47.8
BraA04t16375Z Brassica rapa HOM05D003360 ORTHO05D003759 1.6e-06 55.8 48 56.2
BraA07t29806Z Brassica rapa HOM05D003360 ORTHO05D003759 1.6e-06 55.8 67 47.8
CARHR162650 Cardamine hirsuta HOM05D003360 ORTHO05D003759 1.6e-06 55.8 63 49.2
Haze_05346 Corylus avellana HOM05D003360 ORTHO05D003759 1.6e-06 55.8 55 56.4
Haze_05882 Corylus avellana HOM05D000493 ORTHO05D003759 1.6e-06 55.8 55 56.4
Dinv21222 Davidia involucrata HOM05D003360 ORTHO05D003759 1.6e-06 55.8 80 46.2
Hma1.2p1_0356F.1_g134050 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 1.6e-06 55.8 75 49.3
AT3G52770 Arabidopsis thaliana HOM05D003360 ORTHO05D003759 2.1e-06 55.5 47 57.4
HanXRQChr02g0051411 Helianthus annuus HOM05D003360 ORTHO05D003759 2.1e-06 55.5 66 51.5
HanXRQChr13g0402021 Helianthus annuus HOM05D003360 ORTHO05D003759 2.1e-06 55.5 54 57.4
Medtr1g060310 Medicago truncatula HOM05D003360 ORTHO05D003759 2.1e-06 55.5 71 46.5
SalBow3G2714 Salvia bowleyana HOM05D003360 ORTHO05D003759 2.1e-06 55.5 72 45.8
GSVIVG01033826001 Vitis vinifera HOM05D003360 ORTHO05D003759 2.1e-06 55.5 78 47.4
BcaC01g05667 Brassica carinata HOM05D003360 ORTHO05D003759 2.7e-06 55.1 63 47.6
A03p20030 Brassica napus HOM05D003360 ORTHO05D003759 2.7e-06 55.1 63 47.6
BolC3t14744H Brassica oleracea HOM05D003360 ORTHO05D003759 2.7e-06 55.1 63 47.6
BraA03t11254Z Brassica rapa HOM05D003360 ORTHO05D003759 2.7e-06 55.1 63 47.6
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 2.7e-06 55.1 72 47.2
Os02g0530500 Oryza sativa ssp. japonica HOM05D003360 ORTHO05D003759 2.7e-06 55.1 64 50.0
BcaB01g03851 Brassica carinata HOM05D003360 ORTHO05D003759 3.5e-06 54.7 49 57.1
Cc06_g05630 Coffea canephora HOM05D003360 ORTHO05D003759 3.5e-06 54.7 66 45.5
QL07p039321 Quercus lobata HOM05D003360 ORTHO05D003759 3.5e-06 54.7 71 45.1
Thecc.10G106800 Theobroma cacao HOM05D003360 ORTHO05D003759 3.5e-06 54.7 62 48.4
Hma1.2p1_0084F.1_g043630 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 4.6e-06 54.3 74 43.2
unitig_27.g25402 Utricularia gibba HOM05D003360 ORTHO05D003759 4.6e-06 54.3 45 57.8
unitig_30.g34057 Utricularia gibba HOM05D003360 ORTHO05D003759 4.6e-06 54.3 45 57.8
Lalb_Chr25g0288531 Lupinus albus HOM05D003360 ORTHO05D003759 6.0e-06 53.9 70 48.6
THA.LOC109116419 Tarenaya hassleriana HOM05D003360 ORTHO05D003759 6.0e-06 53.9 67 47.8
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 7.9e-06 53.5 49 61.2
BcaB02g07817 Brassica carinata HOM05D003360 ORTHO05D003759 7.9e-06 53.5 66 47.0
C03p23480 Brassica napus HOM05D003360 ORTHO05D003759 7.9e-06 53.5 63 47.6
Nn2g14121 Nelumbo nucifera HOM05D003360 ORTHO05D003759 7.9e-06 53.5 73 45.2
Zm00001eb421890 Zea mays HOM05D003360 ORTHO05D003759 7.9e-06 53.5 69 44.9


User provided reference genes

Program Settings