Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 5.2e-64 247.7 136 100.0
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 8.4e-46 187.2 142 73.9
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 2.1e-44 182.6 139 71.2
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 6.0e-44 181.0 127 76.4
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.3e-43 179.9 144 70.8
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 3.9e-43 178.3 140 69.3
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 6.7e-43 177.6 138 72.5
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 8.7e-43 177.2 140 67.9
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 1.1e-42 176.8 127 74.8
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.1e-42 176.8 137 67.9
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 4.8e-41 171.4 141 67.4
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.1e-40 168.7 139 67.6
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.1e-40 168.7 140 68.6
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 6.9e-40 167.5 139 67.6
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.2e-39 166.8 138 66.7
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 2.0e-39 166.0 141 63.8
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.0e-39 166.0 136 68.4
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 3.4e-39 165.2 141 62.4
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.4e-39 165.2 140 67.9
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.4e-39 165.2 139 65.5
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 5.8e-39 164.5 141 66.0
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 7.6e-39 164.1 141 63.8
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 9.9e-39 163.7 139 65.5
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 9.9e-39 163.7 139 65.5
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.3e-38 163.3 142 66.2
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.2e-38 162.5 135 68.1
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.9e-38 162.2 144 61.8
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 3.8e-38 161.8 145 66.9
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 3.8e-38 161.8 140 60.0
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 6.4e-38 161.0 138 65.9
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.1e-37 160.2 143 63.6
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.4e-37 159.8 140 62.1
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.9e-37 159.5 145 62.1
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 2.4e-37 159.1 141 64.5
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.4e-37 159.1 134 67.9
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 5.5e-37 157.9 138 63.8
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 1.2e-36 156.8 143 63.6
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.2e-36 156.8 140 64.3
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.2e-36 156.8 138 65.2
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.6e-36 156.4 140 62.1
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.6e-36 156.4 142 60.6
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 6.0e-36 154.5 141 61.7
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 6.0e-36 154.5 143 58.7
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.8e-35 152.9 136 65.4
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.3e-35 152.5 146 64.4
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.3e-35 152.5 130 67.7
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 3.0e-35 152.1 147 57.1
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.0e-35 152.1 153 62.1
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 3.9e-35 151.8 142 60.6
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 6.7e-35 151.0 142 63.4
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 6.7e-35 151.0 156 55.8
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 8.7e-35 150.6 140 60.0
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.1e-34 150.2 132 64.4
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.5e-34 149.8 145 57.2
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 5.6e-34 147.9 130 66.2
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 7.4e-34 147.5 143 61.5
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.3e-33 146.7 141 61.7
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.3e-33 146.7 160 56.9
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.3e-33 146.7 141 58.2
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.3e-33 146.7 139 61.2
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.6e-33 146.4 144 61.1
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.6e-33 146.4 141 57.4
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.1e-33 146.0 140 61.4
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.1e-33 146.0 145 57.2
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.8e-33 145.6 159 54.7
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.8e-33 145.6 139 61.2
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 4.8e-33 144.8 141 58.2
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.1e-32 143.7 141 57.4
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.4e-32 143.3 141 57.4
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.4e-32 143.3 139 60.4
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.8e-32 142.9 140 57.1
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.4e-32 142.5 151 65.6
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 4.0e-32 141.7 146 61.6
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 4.0e-32 141.7 141 57.4
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 4.0e-32 141.7 145 61.4
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 6.9e-32 141.0 138 63.0
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 9.0e-32 140.6 136 60.3
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 9.0e-32 140.6 136 60.3
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 4.5e-31 138.3 140 59.3
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 5.8e-31 137.9 150 56.0
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.0e-30 137.1 150 56.0
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 2.9e-30 135.6 133 58.6
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 6.5e-30 134.4 157 50.3
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.1e-29 133.7 149 57.7
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.4e-29 133.3 162 50.6
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 3.2e-29 132.1 121 63.6
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 7.1e-29 131.0 163 50.3
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 7.1e-29 131.0 150 57.3
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 9.3e-29 130.6 142 55.6
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 7.9e-28 127.5 145 52.4
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.0e-27 127.1 141 56.7
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.3e-27 126.7 140 52.9
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.8e-27 126.3 140 55.7
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.3e-27 125.9 144 59.7
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 3.0e-27 125.6 189 49.2
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 3.0e-27 125.6 139 56.8
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.9e-27 125.2 144 59.0
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.9e-27 125.2 144 59.7
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 5.1e-27 124.8 157 52.9
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 6.7e-27 124.4 142 52.1
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 6.7e-27 124.4 164 56.7
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 2.5e-26 122.5 147 60.5
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 7.4e-26 120.9 154 51.3
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.2e-25 119.4 154 51.3
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 4.8e-25 118.2 140 57.1
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 4.8e-25 118.2 140 57.1
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 8.2e-25 117.5 97 68.0
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 1.8e-24 116.3 147 50.3
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.8e-24 116.3 148 50.7
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 9.0e-24 114.0 150 53.3
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.5e-23 113.2 150 56.7
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.5e-23 113.2 153 49.0
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.0e-23 112.8 148 54.1
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 4.5e-23 111.7 145 55.9
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 4.5e-23 111.7 152 51.3
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.0e-22 110.5 148 50.7
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.7e-22 109.8 152 50.0
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.9e-21 106.3 96 59.4
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 5.5e-21 104.8 146 54.8
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.6e-20 103.2 134 51.5
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 2.7e-20 102.4 148 45.9
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 2.7e-20 102.4 151 46.4
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.7e-20 102.4 151 46.4
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.7e-20 102.4 153 47.7
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 6.1e-20 101.3 139 45.3
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.0e-19 100.5 152 46.1
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.0e-19 100.5 98 67.3
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-19 100.1 151 45.7
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.4e-19 100.1 151 45.7
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.5e-18 96.7 128 51.6
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.9e-18 96.3 94 54.3
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 4.3e-18 95.1 87 63.2
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 4.3e-18 95.1 154 52.6
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 7.4e-18 94.4 131 45.8
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.3e-17 93.6 154 51.9
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 2.8e-17 92.4 104 53.8
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 3.7e-17 92.0 87 57.5
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 3.7e-17 92.0 154 51.3
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.3e-17 91.3 96 54.2
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 8.2e-17 90.9 126 46.0
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 8.2e-17 90.9 99 50.5
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 5.3e-16 88.2 155 50.3
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 5.3e-16 88.2 151 49.7
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 7.7e-15 84.3 147 48.3
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 7.7e-15 84.3 160 47.5
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 1.3e-14 83.6 76 61.8
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 2.9e-14 82.4 90 54.4
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 8.5e-14 80.9 161 44.7
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 8.5e-14 80.9 133 45.9
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.9e-13 79.7 164 45.1
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 7.9e-12 74.3 87 51.7
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.0e-11 73.9 73 57.5
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 8.5e-06 54.3 143 41.3


User provided reference genes

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