Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061696.1 Olea europaea HOM05D002956 ORTHO05D008031 7.6e-115 417.2 206 100.0
SGA_v2.0_scaffold26G11398 Striga asiatica HOM05D002956 ORTHO05D008031 1.4e-63 246.9 208 63.9
Sopen11g024800 Solanum pennellii HOM05D002956 ORTHO05D008031 3.9e-63 245.4 192 66.1
Dinv36148 Davidia involucrata HOM05D002956 ORTHO05D008031 1.5e-62 243.4 195 65.6
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 2.8e-61 239.2 190 62.6
Sabra09G0051500 Salix brachista HOM05D002956 ORTHO05D008031 3.7e-61 238.8 193 62.7
TAR369G0726 Trochodendron aralioides HOM05D002956 ORTHO05D008031 3.7e-61 238.8 197 66.0
PGSC0003DMG400031243 Solanum tuberosum HOM05D002956 ORTHO05D008031 1.4e-60 236.9 181 65.7
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 1.8e-60 236.5 193 63.2
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 1.8e-60 236.5 197 62.4
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 2.4e-60 236.1 193 64.2
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 1.2e-59 233.8 189 63.0
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 3.4e-59 232.3 193 62.2
Hund07424 Selenicereus undatus HOM05D002956 ORTHO05D008031 3.4e-59 232.3 196 62.8
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 4.5e-59 231.9 192 62.5
CARHR118990 Cardamine hirsuta HOM05D002956 ORTHO05D008031 7.7e-59 231.1 195 62.6
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 1.7e-58 229.9 192 63.0
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 2.9e-58 229.2 194 64.4
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 5.0e-58 228.4 188 64.4
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 6.5e-58 228.0 193 62.7
Cc01_g06320 Coffea canephora HOM05D002956 ORTHO05D008031 8.5e-58 227.6 199 61.3
DCAR_006894 Daucus carota HOM05D002956 ORTHO05D008031 8.5e-58 227.6 193 63.7
FAN11G2127 Fragaria x ananassa HOM05D002956 ORTHO05D008031 8.5e-58 227.6 198 63.6
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 1.4e-57 226.9 196 63.3
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 4.2e-57 225.3 195 60.5
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 5.5e-57 224.9 194 62.9
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 5.5e-57 224.9 200 63.0
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 7.2e-57 224.6 192 62.0
Thhalv10002083m.g Eutrema salsugineum HOM05D002956 ORTHO05D008031 9.4e-57 224.2 193 60.6
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 1.6e-56 223.4 190 63.2
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 1.6e-56 223.4 192 60.4
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 2.1e-56 223.0 193 61.7
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 2.1e-56 223.0 198 60.1
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 2.7e-56 222.6 192 60.4
Sp4g08660 Schrenkiella parvula HOM05D002956 ORTHO05D008031 4.7e-56 221.9 192 60.9
Sc06g0004740 Simmondsia chinensis HOM05D002956 ORTHO05D008031 6.1e-56 221.5 197 61.9
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 7.9e-56 221.1 192 62.0
AT2G26810 Arabidopsis thaliana HOM05D002956 ORTHO05D008031 1.8e-55 219.9 203 58.6
AL4G20000 Arabidopsis lyrata HOM05D002956 ORTHO05D008031 3.0e-55 219.2 194 60.8
arahy.Tifrunner.gnm1.ann1.XLU01S Arachis hypogaea HOM05D002956 ORTHO05D008031 3.0e-55 219.2 191 60.7
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 3.9e-55 218.8 197 59.4
Aqoxy2G00442 Aquilegia oxysepala HOM05D002956 ORTHO05D008031 5.2e-55 218.4 188 59.0
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 6.7e-55 218.0 187 62.6
Carub.0004s0727 Capsella rubella HOM05D002956 ORTHO05D008031 6.7e-55 218.0 193 61.1
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 1.5e-54 216.9 194 59.8
Haze_23261 Corylus avellana HOM05D002956 ORTHO05D008031 3.3e-54 215.7 180 62.8
FAN16G1792 Fragaria x ananassa HOM05D002956 ORTHO05D008031 3.3e-54 215.7 182 63.7
AUR62000217 Chenopodium quinoa HOM05D002956 ORTHO05D008031 5.7e-54 214.9 185 62.7
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 5.7e-54 214.9 186 61.3
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 7.4e-54 214.5 187 61.5
Actinidia06980 Actinidia chinensis HOM05D002956 ORTHO05D008031 9.7e-54 214.2 198 59.6
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 9.7e-54 214.2 198 57.6
QL01p016670 Quercus lobata HOM05D002956 ORTHO05D008031 9.7e-54 214.2 191 59.7
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 1.3e-53 213.8 199 55.3
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 1.7e-53 213.4 191 59.7
ClCG02G022710 Citrullus lanatus HOM05D002956 ORTHO05D008031 3.7e-53 212.2 201 56.2
EL10Ac4g10091 Beta vulgaris HOM05D002956 ORTHO05D008031 1.4e-52 210.3 195 59.0
Duzib150G0193 Durio zibethinus HOM05D002956 ORTHO05D008031 2.4e-52 209.5 203 56.7
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 2.4e-52 209.5 188 57.4
MBI19_g19211_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D008031 4.1e-52 208.8 205 55.6
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 7.0e-52 208.0 197 57.9
ATR0307G044 Amborella trichopoda HOM05D002956 ORTHO05D008031 9.1e-52 207.6 214 51.4
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 1.2e-51 207.2 184 58.7
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 1.2e-51 207.2 182 60.4
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 5.9e-51 204.9 203 55.7
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 1.0e-50 204.1 189 57.1
Nitab4.5_0007012g0050 Nicotiana tabacum HOM05D002956 ORTHO05D008031 2.9e-50 202.6 171 64.3
Lalb_Chr15g0078511 Lupinus albus HOM05D002956 ORTHO05D008031 1.9e-49 199.9 195 56.4
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 9.4e-49 197.6 222 52.7
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 1.2e-48 197.2 198 54.5
arahy.Tifrunner.gnm1.ann1.1Z9FJQ Arachis hypogaea HOM05D002956 ORTHO05D008031 1.6e-48 196.8 191 57.1
SEGI_28475 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 2.8e-45 186.0 192 51.6
VMungo1080G1429 Vigna mungo HOM05D002956 ORTHO05D008031 3.7e-45 185.7 191 54.5
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 1.1e-44 184.1 184 52.7
Rhsim13G0206100 Rhododendron simsii HOM05D002956 ORTHO05D008031 1.4e-44 183.7 189 58.2
RcHm_v2.0_Chr5g0050251 Rosa chinensis HOM05D002956 ORTHO05D008031 3.1e-44 182.6 140 67.1
AUR62006562 Chenopodium quinoa HOM05D002956 ORTHO05D008031 7.0e-44 181.4 199 56.8
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 2.0e-43 179.9 174 55.2
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 2.7e-43 179.5 170 57.1
PSO384G3941 Papaver somniferum HOM05D002956 ORTHO05D008031 1.0e-42 177.6 188 52.1
Lsat_1_v5_gn_5_63100 Lactuca sativa HOM05D002956 ORTHO05D008031 5.0e-42 175.3 230 45.2
Atru.chr3.3008 Acer truncatum HOM05D002956 ORTHO05D008031 9.4e-41 171.0 140 61.4
MELO3C014548.2 Cucumis melo HOM05D002956 ORTHO05D008031 5.2e-39 165.2 140 58.6
Migut.N02382 Erythranthe guttata HOM05D002956 ORTHO05D008031 5.7e-38 161.8 143 60.1
Nitab4.5_0004018g0060 Nicotiana tabacum HOM05D002956 ORTHO05D008031 1.7e-37 160.2 191 50.8
CDE04G0360 Ceratophyllum demersum HOM05D002956 ORTHO05D008031 4.8e-37 158.7 153 55.6
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 9.1e-36 154.5 185 43.8
HPP92_001025 Vanilla planifolia HOM05D002956 ORTHO05D008031 2.0e-35 153.3 138 57.2
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 1.0e-34 151.0 188 43.6
Peaxi162Scf00004g04220 Petunia axillaris HOM05D002956 ORTHO05D008031 1.9e-33 146.7 134 59.0
CAN.G468.2 Capsicum annuum HOM05D002956 ORTHO05D008031 4.2e-33 145.6 151 57.0
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 8.0e-32 141.4 192 40.1
Psat4g060320 Pisum sativum HOM05D002956 ORTHO05D008031 8.0e-32 141.4 159 50.9
Solyc11g065040.2 Solanum lycopersicum HOM05D002956 ORTHO05D008031 1.0e-31 141.0 135 57.8
FAN21G3062 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.4e-31 140.6 84 83.3
Aa31LG5G8970 Aethionema arabicum HOM05D002956 ORTHO05D008031 1.8e-31 140.2 194 44.3
SEGI_15484 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 3.0e-31 139.4 142 49.3
FAN25G3179 Fragaria x ananassa HOM05D002956 ORTHO05D008031 7.5e-30 134.8 127 56.7
Ah.06g194770 Amaranthus hybridus HOM05D002956 ORTHO05D008031 1.3e-29 134.0 196 44.9
vmacro04048 Vaccinium macrocarpon HOM05D002956 ORTHO05D008031 1.7e-26 123.6 105 62.9
Lj2C795T0 Lonicera japonica HOM05D002956 ORTHO05D008031 1.5e-22 110.5 84 67.9
FAN25G0087 Fragaria x ananassa HOM05D002956 ORTHO05D008031 9.8e-22 107.8 141 45.4
Psat2g099480 Pisum sativum HOM05D002956 ORTHO05D008031 3.2e-20 102.8 185 39.5
CAN.G1049.9 Capsicum annuum HOM05D002956 ORTHO05D008031 5.4e-20 102.1 75 70.7
CBR_g39846 Chara braunii HOM05D002956 ORTHO05D008031 7.8e-19 98.2 146 36.3
Psat2g099560 Pisum sativum HOM05D001082 ORTHO05D001538 4.7e-16 89.0 175 37.7
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 8.0e-16 88.2 171 38.0
Zm00001eb110260 Zea mays HOM05D002956 ORTHO05D008031 1.1e-15 87.8 121 43.8
Psat5g130120 Pisum sativum HOM05D001082 ORTHO05D001538 1.2e-14 84.3 159 39.0
unitig_22.g6189 Utricularia gibba HOM05D002956 ORTHO05D008031 4.9e-13 79.0 74 54.1
vmacro04047 Vaccinium macrocarpon HOM05D002956 ORTHO05D008031 5.4e-12 75.5 57 71.9
Peaxi162Scf00080g00812 Petunia axillaris HOM05D002956 ORTHO05D008031 4.6e-11 72.4 51 68.6
MELO3C020642.2 Cucumis melo HOM05D002956 ORTHO05D008031 1.1e-09 67.8 61 55.7
Ca_13119_v3 Cicer arietinum L. HOM05D001920 ORTHO05D004895 4.7e-08 62.4 144 29.2
Psat6g021640 Pisum sativum HOM05D001920 ORTHO05D004895 6.2e-08 62.0 148 28.4
TPR.G13113 Trifolium pratense HOM05D001920 ORTHO05D004895 8.1e-08 61.6 144 28.5
PSO210G7567 Papaver somniferum HOM05D001920 ORTHO05D004895 1.8e-07 60.5 173 23.7
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 4.0e-07 59.3 142 27.5
ATR0716G012 Amborella trichopoda HOM05D001920 ORTHO05D004895 1.2e-06 57.8 146 27.4
HanXRQChr10g0309731 Helianthus annuus HOM05D001920 ORTHO05D004895 1.2e-06 57.8 141 26.2
Sopen08g018250 Solanum pennellii HOM05D001920 ORTHO05D004895 1.2e-06 57.8 144 27.8
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 1.5e-06 57.4 144 25.7
Nitab4.5_0003730g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 1.5e-06 57.4 144 27.8
arahy.Tifrunner.gnm1.ann1.ZYB4F6 Arachis hypogaea HOM05D001920 ORTHO05D004895 2.0e-06 57.0 144 25.7
Lj5g0021243 Lotus japonicus HOM05D001920 ORTHO05D004895 2.0e-06 57.0 144 27.1
Medtr1g015770 Medicago truncatula HOM05D001920 ORTHO05D004895 2.0e-06 57.0 144 27.1
SHI18719 Sapria himalayana HOM05D001920 ORTHO05D004895 2.0e-06 57.0 171 24.0
DCAR_004400 Daucus carota HOM05D001920 ORTHO05D004895 2.6e-06 56.6 141 27.0
Nitab4.5_0003458g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 3.4e-06 56.2 144 27.8
PSO210G1339 Papaver somniferum HOM05D001920 ORTHO05D004895 3.4e-06 56.2 204 22.5
Prupe.1G408900 Prunus persica HOM05D001920 ORTHO05D004895 3.4e-06 56.2 144 26.4
arahy.Tifrunner.gnm1.ann1.Z4JLGK Arachis hypogaea HOM05D001920 ORTHO05D004895 4.4e-06 55.8 144 25.7
Solyc08g062770.3 Solanum lycopersicum HOM05D001920 ORTHO05D004895 5.8e-06 55.5 144 28.5
CANSAT25G1922 Cannabis sativa HOM05D001920 ORTHO05D004895 7.5e-06 55.1 141 22.7
FvH4_2g31511 Fragaria vesca HOM05D001920 ORTHO05D004895 7.5e-06 55.1 141 26.2
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.5e-06 55.1 141 26.2
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.5e-06 55.1 141 26.2
Lj7C264T3 Lonicera japonica HOM05D001920 ORTHO05D004895 7.5e-06 55.1 146 28.8


User provided reference genes

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