Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 3.9e-193 677.9 334 100.0
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.6e-125 452.6 334 68.0
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 8.2e-119 431.0 334 64.4
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 3.1e-118 429.1 284 71.5
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 4.1e-118 428.7 391 58.8
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.0e-116 424.1 336 65.2
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.3e-116 423.7 353 62.3
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 6.5e-116 421.4 335 64.2
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.9e-115 419.9 391 56.8
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 1.6e-114 416.8 331 65.3
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 1.0e-113 414.1 330 64.5
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.6e-112 409.5 329 62.9
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 5.7e-112 408.3 326 63.5
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 9.7e-112 407.5 309 67.6
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 2.8e-111 406.0 330 60.6
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.8e-111 406.0 330 62.4
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 4.1e-110 402.1 326 63.5
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 4.1e-110 402.1 330 63.0
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 5.3e-110 401.7 314 63.7
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 1.2e-109 400.6 326 62.0
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.2e-109 400.6 325 62.2
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.7e-108 396.7 323 63.2
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.7e-108 396.7 326 62.6
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 2.9e-108 396.0 365 57.5
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 2.9e-108 396.0 335 59.4
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 2.9e-108 396.0 328 62.8
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.9e-107 393.3 330 60.6
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 2.5e-107 392.9 300 63.3
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 3.2e-107 392.5 339 58.7
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.2e-107 392.1 335 59.1
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 7.2e-107 391.3 328 61.6
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.6e-106 390.2 316 62.7
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.1e-106 389.8 306 63.7
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.1e-106 389.8 306 63.7
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 4.7e-106 388.7 358 57.0
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 6.1e-106 388.3 326 59.8
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-105 387.5 337 60.8
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-105 387.1 337 60.5
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 4.0e-105 385.6 326 60.4
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 8.8e-105 384.4 335 59.4
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.5e-104 383.6 324 59.6
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 9.7e-104 380.9 301 62.1
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.3e-103 380.6 333 58.3
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.8e-103 379.4 333 58.6
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.8e-103 379.4 299 61.5
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.7e-103 379.0 299 61.2
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 3.7e-103 379.0 375 55.2
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 6.3e-103 378.3 308 60.7
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 3.1e-102 375.9 326 58.3
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.1e-102 375.9 290 62.4
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.1e-102 375.6 290 62.1
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 5.3e-102 375.2 237 73.8
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 5.3e-102 375.2 335 57.6
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 3.5e-101 372.5 331 58.9
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 3.5e-101 372.5 277 65.0
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.9e-101 371.7 257 69.6
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.0e-100 370.9 275 64.0
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.3e-100 370.5 322 58.7
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.3e-100 370.5 329 59.3
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 2.9e-100 369.4 330 57.3
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 2.9e-100 369.4 332 57.5
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 3.8e-100 369.0 327 58.4
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 5.0e-100 368.6 325 58.5
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 6.5e-100 368.2 350 56.0
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.1e-99 367.5 308 61.7
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.1e-99 367.5 334 56.0
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.5e-99 367.1 291 61.2
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 3.2e-99 365.9 368 54.1
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 7.2e-99 364.8 292 63.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 7.2e-99 364.8 325 57.2
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 1.2e-98 364.0 331 57.1
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 1.2e-98 364.0 331 57.1
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.2e-98 364.0 221 78.3
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.2e-98 364.0 329 57.4
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.6e-98 363.6 333 57.1
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.7e-98 362.8 317 55.8
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 3.6e-98 362.5 251 66.1
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 4.7e-98 362.1 332 57.2
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 8.0e-98 361.3 255 67.1
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 8.0e-98 361.3 318 56.6
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.0e-97 360.9 324 56.8
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 2.3e-97 359.8 321 57.6
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 4.0e-97 359.0 319 56.7
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 6.8e-97 358.2 315 58.1
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 6.8e-97 358.2 252 68.3
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 8.8e-97 357.8 262 64.9
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 7.5e-96 354.8 318 57.5
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.8e-96 354.4 327 57.2
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 9.8e-96 354.4 252 67.9
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.3e-95 354.0 328 54.6
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 1.3e-95 354.0 318 57.5
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.3e-95 354.0 296 60.1
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 3.7e-95 352.4 324 54.6
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 4.8e-95 352.1 296 60.8
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 8.3e-95 351.3 290 60.3
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.1e-94 350.9 321 58.6
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.1e-94 350.9 298 60.1
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.1e-94 350.9 266 63.9
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 5.4e-94 348.6 329 55.9
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.0e-93 346.7 327 55.7
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.5e-93 345.9 288 57.6
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 4.5e-93 345.5 266 63.5
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 5.9e-93 345.1 251 66.9
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 7.7e-93 344.7 320 55.0
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 3.8e-92 342.4 332 54.5
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.2e-90 337.4 283 59.4
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 4.7e-90 335.5 250 64.8
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.5e-88 330.5 244 61.1
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 9.8e-88 327.8 294 56.1
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.1e-86 324.3 340 51.5
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 6.6e-84 315.1 364 47.0
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 8.0e-82 308.1 225 65.3
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 8.9e-81 304.7 252 61.1
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.4e-80 302.8 314 50.3
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 7.5e-80 301.6 260 56.9
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.1e-75 287.7 197 70.6
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.8e-74 283.1 339 47.8
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 6.2e-74 282.0 296 49.0
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.8e-73 280.4 237 58.2
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.7e-71 272.7 230 55.2
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.3e-68 264.2 278 49.6
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 5.6e-67 258.8 211 60.2
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.3e-63 247.7 213 58.7
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.9e-62 243.8 194 61.3
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.1e-61 240.4 233 49.4
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.1e-61 240.4 233 49.4
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.3e-60 236.9 213 58.2
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 5.1e-60 235.7 235 51.1
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 7.3e-59 231.9 164 66.5
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 6.2e-58 228.8 233 48.5
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.1e-57 226.5 147 68.7
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 8.4e-55 218.4 161 65.8
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 2.7e-53 213.4 262 40.5
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.9e-51 207.2 213 51.6
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 9.6e-51 204.9 159 63.5
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 1.3e-47 194.5 253 39.1
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 3.2e-46 189.9 192 52.6
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.5e-43 181.0 116 71.6
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.8e-42 176.8 171 58.5
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 5.8e-40 169.1 315 35.9
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.4e-38 164.5 131 58.8
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.3e-36 157.1 197 44.7
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.6e-32 143.7 107 60.7
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 4.9e-31 139.4 151 49.0
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 3.3e-27 126.7 131 53.4
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 4.8e-26 122.9 174 44.3
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.4e-22 111.3 249 31.3
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 5.1e-20 102.8 70 67.1
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.1e-19 101.7 76 64.5
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 9.6e-19 98.6 76 57.9
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 2.8e-18 97.1 106 43.4
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.4e-17 94.7 72 56.9
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.3e-17 92.8 128 47.7
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 2.2e-15 87.4 88 55.7
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 1.5e-11 74.7 191 31.4
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 5.3e-09 66.2 36 77.8


User provided reference genes

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