Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.3e-88 329.7 169 100.0
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 3.4e-73 278.5 169 82.2
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 3.4e-73 278.5 169 82.8
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 6.5e-72 274.2 169 79.3
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.2e-70 270.0 163 79.8
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.6e-70 269.6 169 78.1
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.0e-69 266.9 169 77.5
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 3.9e-69 265.0 169 78.7
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 1.5e-68 263.1 167 76.6
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.5e-68 263.1 162 79.0
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.6e-68 262.3 169 76.3
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 9.7e-68 260.4 164 77.4
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 2.2e-67 259.2 163 77.9
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 6.3e-67 257.7 166 76.5
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 6.3e-67 257.7 169 75.1
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 8.2e-67 257.3 169 75.7
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 3.1e-66 255.4 166 76.5
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 4.1e-66 255.0 166 75.3
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 5.3e-66 254.6 166 76.5
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 7.0e-66 254.2 165 77.6
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 9.1e-66 253.8 166 75.9
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.2e-65 253.4 166 74.1
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 2.6e-65 252.3 164 75.6
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 4.5e-65 251.5 166 75.3
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.7e-64 249.6 165 75.2
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 1.7e-64 249.6 168 73.8
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 2.2e-64 249.2 165 75.2
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.9e-64 248.8 165 75.2
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 5.0e-64 248.1 166 72.9
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 1.4e-63 246.5 166 75.3
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.4e-63 246.5 165 75.2
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.9e-63 246.1 165 75.2
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.9e-63 246.1 166 71.7
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 2.5e-63 245.7 166 72.9
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.5e-63 245.7 166 72.3
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 2.5e-63 245.7 168 72.0
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 5.5e-63 244.6 164 72.6
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 7.2e-63 244.2 166 73.5
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 9.4e-63 243.8 192 65.6
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.1e-62 242.7 168 71.4
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 3.6e-62 241.9 166 72.9
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.6e-62 241.9 168 70.8
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.0e-61 240.4 162 72.8
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.4e-61 240.0 166 71.1
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 2.3e-61 239.2 164 73.8
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 3.9e-61 238.4 153 76.5
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 5.2e-61 238.0 164 71.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 6.7e-61 237.7 166 69.9
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 1.1e-60 236.9 166 69.3
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-60 236.5 166 71.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-60 236.5 166 71.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-60 236.5 166 71.7
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 1.5e-60 236.5 166 71.1
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-60 235.7 166 71.7
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 2.6e-60 235.7 163 73.0
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 3.3e-60 235.3 166 69.9
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 7.4e-60 234.2 163 71.8
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 9.7e-60 233.8 166 68.7
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.3e-59 233.4 166 69.3
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.7e-59 233.0 166 68.7
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.7e-59 233.0 166 68.7
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.7e-59 233.0 166 68.7
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.7e-59 233.0 166 68.7
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 2.2e-59 232.6 166 70.5
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 2.8e-59 232.3 166 68.7
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 6.3e-59 231.1 166 68.1
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 1.8e-58 229.6 159 71.7
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.8e-58 229.6 166 69.9
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 5.3e-58 228.0 203 60.6
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 2.6e-57 225.7 166 68.7
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-56 223.8 154 73.4
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 2.2e-56 222.6 162 66.7
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 2.5e-55 219.2 162 67.9
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 5.5e-55 218.0 149 73.8
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 5.5e-55 218.0 164 65.2
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.2e-54 216.9 138 76.8
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 1.2e-54 216.9 167 64.7
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 2.1e-54 216.1 188 59.6
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 4.7e-54 214.9 166 62.7
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 2.3e-53 212.6 190 57.9
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 9.7e-52 207.2 170 57.6
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.4e-50 203.4 164 62.2
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 4.1e-50 201.8 162 61.7
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 9.1e-50 200.7 139 71.2
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 2.7e-49 199.1 163 61.3
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.7e-49 199.1 161 62.7
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 1.0e-48 197.2 158 60.8
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.1e-47 193.7 136 67.6
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 1.9e-47 193.0 158 60.1
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 3.2e-47 192.2 139 66.2
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 5.5e-47 191.4 137 64.2
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 7.2e-47 191.0 153 58.2
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 7.2e-47 191.0 190 53.2
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.2e-47 191.0 164 55.5
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 9.4e-47 190.7 153 58.2
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 1.2e-46 190.3 153 57.5
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 1.2e-46 190.3 153 57.5
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 2.7e-46 189.1 157 56.1
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.7e-46 189.1 164 55.5
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 4.7e-46 188.3 126 69.8
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.0e-45 187.2 175 57.7
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.4e-45 186.8 164 53.7
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 2.3e-45 186.0 122 74.6
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 4.0e-45 185.3 152 57.9
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 4.0e-45 185.3 118 74.6
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 5.2e-45 184.9 152 57.2
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 5.2e-45 184.9 116 77.6
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 6.8e-45 184.5 164 54.3
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 8.8e-45 184.1 137 64.2
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 2.6e-44 182.6 153 54.9
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 9.8e-44 180.6 117 74.4
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.3e-43 180.3 127 70.1
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 6.3e-43 177.9 134 64.2
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 5.4e-42 174.9 140 56.4
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 7.0e-42 174.5 160 51.2
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 2.7e-41 172.6 116 75.9
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 5.9e-41 171.4 116 72.4
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 1.0e-40 170.6 135 65.2
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-40 169.5 116 72.4
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.2e-33 147.1 156 51.3
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 5.9e-33 144.8 116 62.1
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 5.0e-32 141.7 163 44.8
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 1.1e-31 140.6 160 46.2
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 4.3e-31 138.7 92 68.5
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 5.6e-31 138.3 113 65.5
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 7.3e-31 137.9 103 63.1
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.4e-29 133.7 122 54.1
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 2.6e-28 129.4 112 61.6
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.4e-28 128.6 131 54.2
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 7.5e-28 127.9 163 41.7
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.7e-27 126.7 75 80.0
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 2.0e-25 119.8 143 44.8
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 6.0e-25 118.2 113 49.6
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 6.6e-24 114.8 71 77.5
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 2.5e-23 112.8 163 46.6
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.6e-22 110.2 163 43.6
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 6.2e-22 108.2 92 54.3
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 1.2e-20 104.0 75 64.0
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 1.2e-20 104.0 75 64.0
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 1.2e-20 104.0 75 64.0
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 9.8e-20 100.9 84 61.9
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.3e-19 97.8 148 41.2
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 9.2e-18 94.4 71 59.2
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-16 90.5 94 48.9
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 6.6e-16 88.2 52 73.1
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 1.4e-13 80.5 49 83.7
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.4e-13 80.5 49 83.7
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 3.4e-12 75.9 69 59.4
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 4.4e-12 75.5 75 53.3
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.7e-11 73.6 59 61.0
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 2.2e-11 73.2 54 66.7
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.9e-10 70.1 63 57.1
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.2e-10 69.3 48 72.9
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.2e-09 67.4 58 51.7
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 9.5e-07 57.8 43 67.4


User provided reference genes

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