Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 2.4e-47 192.2 124 100.0
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 9.4e-12 73.9 43 79.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.2e-11 73.6 54 61.1
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 1.6e-11 73.2 50 64.0
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.0e-10 70.5 46 65.2
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.0e-10 70.5 43 72.1
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.3e-10 69.3 43 69.8
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.3e-10 69.3 54 63.0
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.3e-10 69.3 43 69.8
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.0e-10 68.9 43 69.8
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 4.0e-10 68.6 44 70.5
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 5.2e-10 68.2 50 64.0
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 6.8e-10 67.8 46 63.0
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 6.8e-10 67.8 48 60.4
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 8.8e-10 67.4 43 67.4
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.5e-09 66.6 43 65.1
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.5e-09 66.6 43 69.8
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 2.0e-09 66.2 43 67.4
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 2.6e-09 65.9 54 55.6
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.6e-09 65.9 52 57.7
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 3.4e-09 65.5 42 69.0
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 4.4e-09 65.1 46 63.0
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 4.4e-09 65.1 46 63.0
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 4.4e-09 65.1 45 62.2
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.4e-09 65.1 45 62.2
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 4.4e-09 65.1 45 62.2
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 4.4e-09 65.1 43 67.4
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 5.7e-09 64.7 46 63.0
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 5.7e-09 64.7 46 63.0
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 5.7e-09 64.7 46 63.0
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 5.7e-09 64.7 46 63.0
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 5.7e-09 64.7 46 63.0
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 5.7e-09 64.7 43 62.8
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.7e-09 64.7 45 62.2
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 5.7e-09 64.7 59 50.8
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 7.5e-09 64.3 54 57.4
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 7.5e-09 64.3 54 57.4
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 7.5e-09 64.3 54 57.4
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 7.5e-09 64.3 42 66.7
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.5e-09 64.3 43 65.1
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.5e-09 64.3 43 65.1
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.5e-09 64.3 43 65.1
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 7.5e-09 64.3 52 57.7
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 7.5e-09 64.3 45 62.2
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 9.8e-09 63.9 46 60.9
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 9.8e-09 63.9 43 62.8
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 9.8e-09 63.9 43 67.4
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.3e-08 63.5 46 60.9
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 1.3e-08 63.5 43 62.8
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-08 63.5 45 62.2
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 1.3e-08 63.5 45 60.0
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 1.7e-08 63.2 43 62.8
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.7e-08 63.2 58 51.7
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 2.2e-08 62.8 46 60.9
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.2e-08 62.8 42 64.3
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.8e-08 62.4 45 60.0
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 2.8e-08 62.4 45 57.8
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.7e-08 62.0 46 60.9
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 3.7e-08 62.0 46 60.9
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 3.7e-08 62.0 43 60.5
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 4.9e-08 61.6 43 62.8
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 4.9e-08 61.6 46 58.7
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 4.9e-08 61.6 43 62.8
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.9e-08 61.6 43 60.5
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.9e-08 61.6 43 60.5
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.9e-08 61.6 43 60.5
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 4.9e-08 61.6 43 60.5
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 6.3e-08 61.2 42 61.9
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 6.3e-08 61.2 42 61.9
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 8.3e-08 60.8 46 60.9
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 8.3e-08 60.8 46 58.7
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 8.3e-08 60.8 43 60.5
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 8.3e-08 60.8 43 60.5
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 8.3e-08 60.8 43 62.8
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 8.3e-08 60.8 43 58.1
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 8.3e-08 60.8 45 60.0
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 1.1e-07 60.5 45 60.0
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.1e-07 60.5 43 58.1
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.4e-07 60.1 38 68.4
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.4e-07 60.1 45 60.0
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.8e-07 59.7 43 58.1
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.4e-07 59.3 42 57.1
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.4e-07 59.3 38 68.4
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 2.4e-07 59.3 45 57.8
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 2.4e-07 59.3 53 45.3
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 4.1e-07 58.5 50 52.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 4.1e-07 58.5 39 64.1
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 4.1e-07 58.5 58 50.0
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 5.4e-07 58.2 44 54.5
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 5.4e-07 58.2 44 59.1
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.2e-07 57.4 38 65.8
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.2e-06 57.0 49 49.0
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.2e-06 57.0 53 47.2
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.6e-06 56.6 43 58.1
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.7e-06 55.8 37 62.2
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.7e-06 55.8 37 62.2
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.7e-06 55.8 37 62.2
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 4.5e-06 55.1 42 52.4
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 4.5e-06 55.1 42 52.4
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.5e-06 55.1 55 52.7
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.5e-06 55.1 55 52.7
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 4.5e-06 55.1 50 48.0
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 4.5e-06 55.1 43 62.8
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 4.5e-06 55.1 43 62.8
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 5.9e-06 54.7 43 53.5
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 5.9e-06 54.7 38 57.9
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 5.9e-06 54.7 46 58.7
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 7.7e-06 54.3 42 57.1


User provided reference genes

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