Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 4.9e-152 541.2 288 100.0
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 9.5e-23 111.7 85 65.9
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.5e-20 104.4 71 70.4
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.6e-20 103.6 71 71.8
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 2.6e-20 103.6 70 71.4
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.4e-20 102.8 70 70.0
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.4e-20 102.8 70 70.0
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 4.4e-20 102.8 70 70.0
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 7.5e-20 102.1 79 62.0
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 9.8e-20 101.7 79 60.8
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.3e-19 101.3 70 71.4
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.3e-19 101.3 118 52.5
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.7e-19 100.9 70 71.4
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 3.7e-19 99.8 71 70.4
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 3.7e-19 99.8 64 76.6
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 6.4e-19 99.0 70 70.0
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 8.3e-19 98.6 71 66.2
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.1e-18 98.2 70 70.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.9e-18 97.4 70 70.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.9e-18 97.4 70 70.0
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.9e-18 97.4 70 70.0
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 2.4e-18 97.1 76 60.5
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.4e-18 97.1 70 68.6
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.4e-18 97.1 70 68.6
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.2e-18 96.7 59 78.0
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 3.2e-18 96.7 70 67.1
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.4e-18 95.9 70 70.0
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.4e-18 95.9 70 70.0
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.4e-18 95.9 70 70.0
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.4e-18 95.9 70 70.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 7.0e-18 95.5 68 70.6
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 9.2e-18 95.1 70 70.0
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 9.2e-18 95.1 70 67.1
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.2e-17 94.7 79 58.2
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.2e-17 94.7 61 75.4
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.2e-17 94.7 69 68.1
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.2e-17 94.7 98 52.0
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.6e-17 94.4 71 69.0
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.0e-17 94.0 79 58.2
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.7e-17 93.6 79 60.8
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.7e-17 93.6 70 67.1
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.7e-17 93.6 68 69.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 3.5e-17 93.2 70 67.1
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 3.5e-17 93.2 70 67.1
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 4.6e-17 92.8 64 73.4
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 6.0e-17 92.4 70 61.4
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 6.0e-17 92.4 69 66.7
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 7.8e-17 92.0 70 64.3
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.8e-17 92.0 69 68.1
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 7.8e-17 92.0 58 75.9
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.0e-16 91.7 71 66.2
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 1.0e-16 91.7 71 66.2
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.0e-16 91.7 70 67.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.0e-16 91.7 70 67.1
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.0e-16 91.7 79 59.5
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.0e-16 91.7 70 67.1
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.3e-16 91.3 131 46.6
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.7e-16 90.9 56 75.0
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.7e-16 90.9 69 66.7
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.7e-16 90.9 69 66.7
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.7e-16 90.9 69 66.7
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.7e-16 90.9 69 66.7
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.7e-16 90.9 117 47.9
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 2.3e-16 90.5 73 67.1
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 2.3e-16 90.5 70 64.3
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 3.9e-16 89.7 120 46.7
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 3.9e-16 89.7 131 46.6
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 3.9e-16 89.7 62 69.4
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 5.0e-16 89.4 79 58.2
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 5.0e-16 89.4 71 64.8
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.0e-16 89.4 69 65.2
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 5.0e-16 89.4 72 61.1
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 6.6e-16 89.0 71 64.8
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 6.6e-16 89.0 71 66.2
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 8.6e-16 88.6 79 54.4
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 8.6e-16 88.6 71 64.8
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 8.6e-16 88.6 71 64.8
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 8.6e-16 88.6 70 65.7
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 8.6e-16 88.6 71 64.8
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.1e-15 88.2 71 64.8
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.1e-15 88.2 61 72.1
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.5e-15 87.8 71 64.8
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 1.5e-15 87.8 71 64.8
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.9e-15 87.4 71 64.8
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 2.5e-15 87.0 69 62.3
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 5.6e-15 85.9 70 65.7
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.3e-15 85.5 73 58.9
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 7.3e-15 85.5 54 75.9
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 9.5e-15 85.1 64 67.2
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.2e-14 84.7 71 62.0
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.2e-14 84.7 71 62.0
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.8e-14 83.6 61 65.6
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.7e-14 82.8 54 72.2
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.7e-14 82.8 76 57.9
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.7e-14 82.8 55 72.7
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 6.2e-14 82.4 70 62.9
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 6.2e-14 82.4 70 62.9
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 6.2e-14 82.4 92 53.3
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 6.2e-14 82.4 70 62.9
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 8.1e-14 82.0 118 42.4
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 8.1e-14 82.0 109 43.1
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 8.1e-14 82.0 109 43.1
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 8.1e-14 82.0 109 43.1
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 8.1e-14 82.0 109 43.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 8.1e-14 82.0 118 42.4
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 8.1e-14 82.0 118 42.4
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 8.1e-14 82.0 59 67.8
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-13 81.6 60 66.7
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-13 81.6 60 66.7
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.4e-13 81.3 109 42.2
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.4e-13 81.3 54 72.2
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.8e-13 80.9 63 61.9
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.3e-13 80.5 68 60.3
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 4.0e-13 79.7 53 73.6
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 5.2e-13 79.3 68 58.8
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 6.8e-13 79.0 70 58.6
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 8.9e-13 78.6 53 71.7
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 8.9e-13 78.6 54 70.4
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.6e-12 77.0 62 58.1
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 4.4e-12 76.3 72 58.3
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 4.4e-12 76.3 54 68.5
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 5.8e-12 75.9 68 58.8
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 5.8e-12 75.9 65 55.4
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.3e-11 74.7 56 64.3
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 6.4e-11 72.4 72 56.9
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 1.9e-10 70.9 64 60.9
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.5e-09 66.6 49 65.3
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 4.6e-09 66.2 50 58.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 7.8e-09 65.5 55 54.5
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.7e-08 64.3 55 52.7
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-07 60.8 40 72.5
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 2.5e-07 60.5 137 33.6
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.5e-07 60.5 52 51.9
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 4.3e-07 59.7 54 51.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.6e-06 57.8 61 50.8


User provided reference genes

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