Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 7.7e-197 690.3 341 100.0
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 2.9e-188 661.8 340 95.3
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 9.7e-184 646.7 340 92.9
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 9.7e-184 646.7 340 92.1
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 9.7e-184 646.7 340 92.1
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 3.7e-183 644.8 340 91.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 8.2e-183 643.7 340 91.5
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.4e-182 642.9 340 91.2
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.8e-182 642.5 340 91.8
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.4e-182 642.1 340 90.9
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.4e-182 642.1 340 91.2
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 2.4e-182 642.1 340 91.5
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 2.4e-182 642.1 340 92.1
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 4.1e-182 641.3 340 91.8
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 5.3e-182 641.0 340 90.6
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 5.3e-182 641.0 340 92.1
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.2e-181 639.8 340 91.2
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.2e-181 639.8 340 90.9
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.0e-181 639.0 340 91.2
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.0e-181 639.0 340 91.8
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 4.5e-181 637.9 340 90.9
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 5.9e-181 637.5 340 90.3
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.7e-181 637.1 340 91.2
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 7.7e-181 637.1 340 91.2
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.0e-180 636.7 340 90.9
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.0e-180 636.7 340 90.9
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 2.9e-180 635.2 340 90.6
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 5.0e-180 634.4 340 91.2
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 8.5e-180 633.6 340 90.9
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 1.1e-179 633.3 340 90.6
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.5e-179 632.9 340 90.0
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 1.5e-179 632.9 340 90.3
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 1.9e-179 632.5 340 90.3
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 3.2e-179 631.7 340 90.0
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 4.2e-179 631.3 340 89.7
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 4.2e-179 631.3 340 90.3
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 5.5e-179 630.9 340 90.6
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 5.5e-179 630.9 340 89.4
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 5.5e-179 630.9 340 89.1
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.2e-178 629.8 340 90.0
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.6e-178 629.4 340 89.7
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.1e-178 629.0 340 89.1
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 2.7e-178 628.6 340 89.1
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.6e-178 628.2 340 89.1
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.4e-177 626.3 340 89.4
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 1.4e-177 626.3 340 89.7
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.8e-177 625.9 340 89.7
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.3e-177 625.5 340 89.4
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 2.3e-177 625.5 340 88.2
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 4.0e-177 624.8 340 89.7
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 6.7e-177 624.0 340 89.4
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 1.1e-176 623.2 340 88.8
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 1.1e-176 623.2 340 88.5
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.5e-176 622.9 340 88.8
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.0e-176 622.5 340 88.8
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 2.0e-176 622.5 340 88.8
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 2.0e-176 622.5 340 88.5
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 2.0e-176 622.5 340 88.8
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 2.6e-176 622.1 340 88.2
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 2.6e-176 622.1 334 89.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 3.3e-176 621.7 340 89.4
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.3e-176 621.7 340 88.2
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 4.4e-176 621.3 340 88.2
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 4.4e-176 621.3 340 88.2
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 4.4e-176 621.3 340 88.2
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 4.4e-176 621.3 340 88.2
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 4.4e-176 621.3 340 88.2
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 5.7e-176 620.9 340 88.8
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 7.5e-176 620.5 376 83.0
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 7.5e-176 620.5 339 87.6
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 9.7e-176 620.2 340 88.5
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 9.7e-176 620.2 340 87.6
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 1.3e-175 619.8 340 88.2
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.3e-175 619.8 340 87.4
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.7e-175 619.4 340 87.9
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.7e-175 619.4 340 87.9
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 2.2e-175 619.0 340 87.4
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.2e-175 619.0 340 88.8
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 2.2e-175 619.0 354 86.2
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 2.8e-175 618.6 340 88.5
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 3.7e-175 618.2 340 87.6
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 3.7e-175 618.2 340 87.6
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.7e-175 618.2 340 87.9
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 6.3e-175 617.5 340 87.4
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 6.3e-175 617.5 354 85.9
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 6.3e-175 617.5 340 87.4
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 8.2e-175 617.1 340 87.1
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.1e-174 616.7 340 87.6
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 1.1e-174 616.7 340 87.4
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 1.1e-174 616.7 340 87.4
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 1.1e-174 616.7 340 87.4
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.1e-174 616.7 340 87.1
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 1.4e-174 616.3 340 87.9
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.4e-174 616.3 335 89.3
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.8e-174 615.9 340 86.5
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.8e-174 615.9 340 88.5
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 1.8e-174 615.9 340 86.8
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 4.1e-174 614.8 340 86.2
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 7.0e-174 614.0 340 86.8
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.2e-173 613.2 340 86.2
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.0e-173 612.5 349 85.1
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 3.5e-173 611.7 340 87.1
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 5.9e-173 610.9 340 85.9
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 7.7e-173 610.5 340 85.9
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.7e-172 609.4 340 86.8
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.9e-172 608.6 355 83.7
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 3.8e-172 608.2 340 86.8
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.5e-171 606.3 340 85.9
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.5e-171 605.5 340 84.1
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 5.5e-171 604.4 340 86.5
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 5.5e-171 604.4 340 85.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 7.2e-171 604.0 340 86.2
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 9.4e-171 603.6 340 86.2
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 2.7e-170 602.1 340 85.9
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 5.7e-168 594.3 335 87.5
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 4.8e-167 591.3 379 78.1
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 1.4e-166 589.7 340 81.5
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 9.1e-166 587.0 340 85.3
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.6e-165 586.3 338 83.7
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 7.7e-165 583.9 340 83.8
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 1.3e-164 583.2 340 84.1
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.9e-163 579.3 341 82.1
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 4.0e-161 571.6 340 82.1
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 2.0e-160 569.3 340 82.9
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 1.3e-159 566.6 340 80.9
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 7.0e-158 560.8 340 79.1
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.2e-157 560.1 340 79.4
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 3.8e-156 555.1 340 80.9
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 3.3e-155 552.0 295 89.5
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.4e-150 536.6 298 85.6
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.0e-149 532.7 340 74.4
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.7e-148 529.6 340 73.8
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 8.6e-148 527.3 271 94.1
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 1.0e-145 520.4 340 72.4
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 2.0e-144 516.2 340 76.2
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.4e-144 515.4 341 72.7
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 5.4e-142 508.1 341 71.3
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 1.6e-141 506.5 335 71.0
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 4.4e-136 488.4 340 69.1
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.7e-135 486.5 340 68.2
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.6e-130 469.9 341 66.6
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 4.0e-129 465.3 259 85.7
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 1.4e-126 456.8 339 70.5
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 7.1e-118 427.9 315 69.5
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 7.3e-115 417.9 300 71.0
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 3.6e-114 415.6 227 88.1
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 9.3e-102 374.4 255 73.3
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 1.1e-99 367.5 338 52.4
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.5e-99 366.3 339 54.3
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.3e-83 312.4 300 53.7
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.7e-79 300.4 160 90.6
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 2.2e-74 283.5 178 76.4
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 9.1e-73 278.1 157 85.4
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 7.7e-72 275.0 157 84.7
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 2.9e-71 273.1 157 82.8
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 3.2e-54 216.5 116 89.7
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.8e-41 174.1 101 85.1
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 2.4e-33 147.1 86 81.4
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 8.0e-29 132.1 296 31.1
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 5.8e-27 125.9 298 28.9
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 9.5e-14 82.0 72 61.1
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 2.9e-10 70.5 261 25.7
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 6.0e-08 62.8 296 21.6


User provided reference genes

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